Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0411
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    36   0.003
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   4.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   6.4  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   6.4  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    24   8.5  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    24   8.5  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 329 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKS 421
           +K  WF E  +MWPG   + +VK+VL+  KS
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKS 41


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 213 IPCSKYKNSFRPSYELNITELTFHNHDIYVQRYDSI 106
           +P + Y   + P Y+LN+      NH+   Q  DSI
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNNMENHNTR-QYLDSI 359


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 195 KNSFRPSYELNITELTFHNHDIYVQRYDS 109
           + SF P YE  ITE     H+ Y+++ ++
Sbjct: 341 RKSFTPMYEDIITEQVLTAHENYIKQLEA 369


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 308 SKKNMDKLKTNWFTESCDMW 367
           S  N+  +K NW TES   W
Sbjct: 550 SMGNIKVVKLNWLTESLSQW 569


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -1

Query: 233 ISRSNNVFLARNIKTRFALLTNSTLLNSHFTITIYMSKDM 114
           +   NN+ L   +KT   +LTN   L     +  Y+++++
Sbjct: 830 VREQNNISLKTPLKTLIVILTNEEYLEDAKLLERYIAEEL 869


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 319 HGQTKNQLVYGIMRYVAWGYFLIRSQRSTAHRK 417
           H  T + L+ GI+  + +  +L+R  + T   K
Sbjct: 502 HSATLSDLLLGILSEIKYYEYLVRKNKETVEEK 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,954
Number of Sequences: 5004
Number of extensions: 31487
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)