Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0411
         (422 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             27   6.4  
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)                        27   8.5  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       27   8.5  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)              27   8.5  

>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 260 TCLILDFNCRLGTNY*SKKNMDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEK 418
           T    +F C +GT      N + LK     ESC   PGG +  E+ + ++T+K
Sbjct: 630 TTFAQEFPCPVGTF----SNTEGLKVK---ESCSPCPGGFYCDELAQTMYTKK 675


>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
          Length = 361

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 260 TCLILDFNCRLGTNY*SKKNMDKLKTNWFTESC 358
           T L+L+ + + G  Y  K+   K    WF E C
Sbjct: 207 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 239


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 336  PTGLRNHAICGLGVLSHSKSKKYCTQKNQ 422
            P G R +A  G+G+     SK+ CT+ N+
Sbjct: 1699 PPGYRGNAPSGIGLSHAHSSKQVCTEINE 1727


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 194  LYFEQGIHYLNVRL*RPKLSVRTCLI-LDFNCRLGTNY*SKKNMDKLKTNWFTESCDMW 367
            + F  GI  L+  +   KLS    L  L  NC + ++  +K   D LKTN   +  ++W
Sbjct: 1077 IIFSAGIDVLDAEVIAEKLSKNGVLRELHINCNIISDEAAKALADGLKTNTSLKVLNLW 1135


>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
          Length = 836

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 260 TCLILDFNCRLGTNY*SKKNMDKLKTNWFTESC 358
           T L+L+ + + G  Y  K+   K    WF E C
Sbjct: 478 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,085
Number of Sequences: 59808
Number of extensions: 215947
Number of successful extensions: 451
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)