Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0411
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...    29   1.0  
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...    29   1.0  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   1.4  

>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 365 WPGGTFSFEVKEVLHTEKS 421
           WPG  FS +VK+VL  EKS
Sbjct: 43  WPGQAFSLQVKKVLFHEKS 61


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 365 WPGGTFSFEVKEVLHTEKS 421
           WPG  FS +VK+VL  EKS
Sbjct: 43  WPGQAFSLQVKKVLFHEKS 61


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 299 NY*SKKNMDKLKTNWFTESCDMWPGGTFSFEVKEV 403
           N   +++++K+  NW    CD+W   T  F V+++
Sbjct: 161 NVEDRESIEKIVDNWRNAPCDIWNENTVVFSVQKL 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,647
Number of Sequences: 27780
Number of extensions: 171948
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)