Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0411
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) / putre...    33   0.11 
At1g23820.2 68414.m03004 spermidine synthase 1 (SPDSYN1) / putre...    32   0.14 
At1g23820.1 68414.m03005 spermidine synthase 1 (SPDSYN1) / putre...    32   0.14 
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc...    28   2.3  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    28   3.0  

>At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) /
           putrescine aminopropyltransferase 2 identical to
           SP|O48661 Spermidine synthase 2 (EC 2.5.1.16)
           (Putrescine aminopropyltransferase 2) (SPDSY 2)
           {Arabidopsis thaliana}
          Length = 340

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 320 MDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKS 421
           M  +   WF+E   MWPG   S +V+++L   KS
Sbjct: 44  MSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKS 77


>At1g23820.2 68414.m03004 spermidine synthase 1 (SPDSYN1) /
           putrescine aminopropyltransferase 1 identical to
           SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16)
           (Putrescine aminopropyltransferase 1) (SPDSY 1)
           {Arabidopsis thaliana}
          Length = 283

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 341 WFTESCDMWPGGTFSFEVKEVLHTEKS 421
           WF+E   MWPG   S +V++VL   KS
Sbjct: 47  WFSEMSPMWPGEAHSLKVEKVLFQGKS 73


>At1g23820.1 68414.m03005 spermidine synthase 1 (SPDSYN1) /
           putrescine aminopropyltransferase 1 identical to
           SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16)
           (Putrescine aminopropyltransferase 1) (SPDSY 1)
           {Arabidopsis thaliana}
          Length = 334

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 341 WFTESCDMWPGGTFSFEVKEVLHTEKS 421
           WF+E   MWPG   S +V++VL   KS
Sbjct: 47  WFSEMSPMWPGEAHSLKVEKVLFQGKS 73


>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
           3a [Arabidopsis thaliana] GI:509425; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
           for cyclin 3b protein GI:728520
          Length = 436

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
 Frame = +1

Query: 46  PQKIYLSTN---RSLSRVSVCHMYRIISLDIYIVIVKCEFSNVEFVRRAKRVFIFRARNT 216
           P  +YL+ N   R LS  S     R+  L +  +++  ++   E        F F   NT
Sbjct: 224 PDTLYLTVNLIDRFLSN-SYIERQRLQLLGVSCMLIASKYE--ELSAPGVEEFCFITANT 280

Query: 217 LFEREIVKTET*CQNLFNFRLQLPTWY*LLKQ-EKHGQTKNQLVYGIMRYVA 369
               E++  E    N  +FRL +PT    L++  K  Q   ++ +  + Y+A
Sbjct: 281 YTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKAAQASYKVPFIELEYLA 332


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
            DNA polymerase III holoenzyme tau subunit [Thermus
            thermophilus] GI:2583049
          Length = 1116

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 242  VFTISRSNNVFLARNIKTRFALLTNSTLLNSHFT 141
            V +I+ S  + L RN++ R  LL+ + LLNS  T
Sbjct: 925  VSSITNSIEMVLRRNVEVRIILLSETELLNSKQT 958


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,459,589
Number of Sequences: 28952
Number of extensions: 148618
Number of successful extensions: 301
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)