Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0409
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    85   7e-18
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.2  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   3.5  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   4.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   4.7  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 48/133 (36%), Positives = 67/133 (50%)
 Frame = +1

Query: 1   SEKYAIPFIGTICFIIPTLAPMYFWGESLNNAWHITVLRYIFSLNGTFLVNSAAHLWGYK 180
           + ++ +P    + FI P+L     WG+     ++  V R +F  + TF VNS AHL G +
Sbjct: 201 NHRHFLPIASFMAFIFPSLFCGLLWGDYRGGYFYAGVCRLVFVHHATFCVNSLAHLIGSQ 260

Query: 181 PYDKSLKATQSGMANAFTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWA 360
           P+D +  A    +    T GEG HNYHH FP DYR       Y + T  FI   +  G A
Sbjct: 261 PFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNGLRWYEY-DPTKIFIYIASLFGLA 319

Query: 361 YDLKTASTNIIEK 399
           Y+L T   N I+K
Sbjct: 320 YNLNTFPDNEIQK 332


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 372 FQIISPSHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVM 259
           ++ ++   PCK +  P C I      ++CP   ++N++
Sbjct: 51  YEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNML 88


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 393 NNIGGSS-FQIISPSHPCKE 337
           NNI     F +I P HPCKE
Sbjct: 414 NNIADDDLFDVILPKHPCKE 433


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 405 TKNRGWDLQTTKWNELKQSSKSFFA*YHFFDDFCKVIQKQASGISY 542
           TK++ W     +W+++ +  +   A   F D +C++  +   G+SY
Sbjct: 638 TKDQEWRRSKREWSKIWRQIEKKNAQAAFDDRYCRIEGRDRRGLSY 683


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 214 GMANAFTFGEGFHNYHHVFPW 276
           G  N F +  G+H  HH FP+
Sbjct: 278 GPLNFFVYNAGYHIEHHDFPY 298


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 67   YFWGESLNNAWHITVLRYIFSLNGTFLV 150
            +FWG  L   W I V+   F L G +L+
Sbjct: 1181 FFWGSKLTKLWKIVVMTVSF-LVGAWLI 1207


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 190 KSLKATQSGMANAFTFGEGFHNYHHVFPWDYRA 288
           K+L  +   +A    + +GFH+Y   F W+++A
Sbjct: 148 KTLSISNRPLALCRIYVDGFHSYMFQFVWNHQA 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,816
Number of Sequences: 5004
Number of extensions: 63543
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)