Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0409
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    33   0.30 
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036...    29   3.7  
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578...    28   8.5  
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    28   8.5  
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415...    28   8.5  

>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 354 SHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHATLSSFQAL 190
           + PC+E   PC ++  P     CP+    N     K+  K  C C A + +F+ +
Sbjct: 571 AEPCEECNLPCQRVREPPCSHPCPLPCHLNDCPPCKALVKRPCHCGAMVHAFECM 625


>01_06_0986 -
           33602714-33602741,33603037-33603146,33603401-33603601,
           33604605-33604697,33604937-33605182,33606007-33606372,
           33606459-33606599,33607170-33607526
          Length = 513

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 207 SKWHGKCIYFW*RISQLPSRFSVGLSGRRIGGQVHKFDNKVHRFLCMD 350
           ++W G C Y     ++    F  G  G   GG +H   NK H + C+D
Sbjct: 87  AEWKGACFYD----NRAWMEFHNGTDGGLGGGTLHLETNKAHSWTCID 130


>08_02_0823 +
           21557111-21557292,21557391-21557473,21557722-21557810,
           21557985-21558058,21558264-21558314,21558406-21558482,
           21560206-21560900
          Length = 416

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +1

Query: 55  LAPMYFWGESLNNAWHITVLRYIFSLNGTFLVNSAAHLWGYKPYDKSLKATQSGMANAFT 234
           LA + +WG       H TVL +  S     L          + Y  SL+   SG +   +
Sbjct: 103 LAALKYWG-------HDTVLNFPLSTYDEELKEMEGQ--SREEYIGSLRRKSSGFSRGVS 153

Query: 235 FGEGFHNYHHVFPWDYRADEL-GDRYINLTT 324
              G   +HH   W+ R   + G++Y+ L T
Sbjct: 154 KYRGVARHHHNGKWEARIGRVFGNKYLYLGT 184


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 148 VNSAAHLWGYKPYDKSLKATQSGMANAFTFGEGFHNY 258
           V    HL G+ P DK++  +   ++NAF  G+   ++
Sbjct: 765 VRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSH 801


>06_01_0581 -
           4153668-4153883,4154070-4155104,4155718-4156292,
           4158457-4158826,4159925-4160590,4161008-4161223,
           4161725-4161793
          Length = 1048

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 192 EPESYSKWHGKCIYFW 239
           E E  SKW  +C YFW
Sbjct: 3   EVEEVSKWRRRCCYFW 18


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,161,929
Number of Sequences: 37544
Number of extensions: 351181
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)