Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0409
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.94 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 584 CW*FLYWVLLY*FKLIHFFISFKS 655
           CW  +Y++++  + + +FF+S +S
Sbjct: 71  CWMNVYYIVILAWAIFYFFMSMRS 94


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 621 N*YNKTQYKNYQQKLRKVISKDKNYYNM 538
           N YN   Y NY        +  K YYN+
Sbjct: 94  NNYNNNNYNNYNYNNNNYNNYKKLYYNI 121


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 648 KLIKKCISLN*YNKTQYKNYQQKL 577
           K+I    +   +N   YKNY +KL
Sbjct: 313 KIISSLSNKTIHNNNNYKNYNKKL 336


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 624 NLYIFLLVLSQILKLIIG 677
           N Y+F L +S +L LI+G
Sbjct: 69  NYYLFNLAVSDLLFLILG 86


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 621 N*YNKTQYKNYQQKL 577
           N YN   Y NY +KL
Sbjct: 331 NNYNNNNYNNYNKKL 345


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 225 ICHATLSSFQALIVRFVSPQMSSAI 151
           I HA+++  +  + R++SP + SA+
Sbjct: 427 IPHASVTDSENTVPRYLSPDVISAL 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,076
Number of Sequences: 438
Number of extensions: 4503
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)