Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0408
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    67   7e-12
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    55   3e-08
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   9.5  
AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 45/115 (39%), Positives = 59/115 (51%)
 Frame = +3

Query: 225 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 404
           + KQI  E+ AS  YL+M  YF  D V  P  AK F + + EEREHAT+L+    +RG  
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG-- 73

Query: 405 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHL 569
            G V  L   + P N  W +   A E AL LE     S+ ++  T   + ND HL
Sbjct: 74  -GRVV-LQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTA-GNHNDAHL 125


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 40/115 (34%), Positives = 56/115 (48%)
 Frame = +3

Query: 225 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 404
           + KQI  E+ AS  YL+M A+F  D +     AK F + + EER HAT+L+    +RG  
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG-- 73

Query: 405 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHL 569
            G V  +   + P    W +   A E AL LE     S+ ++    E   ND HL
Sbjct: 74  -GRVA-MQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQR-NDAHL 125


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +2

Query: 419 RPHH----VQGPRKHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQ 550
           R HH       PR H  G+ R S  A  +  + R+  H GGH   R Q
Sbjct: 198 RDHHNYNSQSSPRSHQGGQDRYS--APKEDNQRRYDNHQGGHDSYRGQ 243


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +3

Query: 300  TVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTS-WESGASA 476
            T N P F K+F      E  H    I    +    T  ++  +T  +P + S   SG + 
Sbjct: 816  TANHPAFTKIFPITMNLESYHFQSTITATTINFTGTSEISSELTPTSPGSASKTTSGMAK 875

Query: 477  LEHALKLESDVTNSIR 524
               + K  S VT+S R
Sbjct: 876  RASSSKHPSAVTSSAR 891


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 307 TAPASRSYSSMLRLKNASTRPSS-LTTCS*GES*QAP*PTSSRTGPPQTRRGRAAHQPSS 483
           ++ +S + ++    ++ ST PSS +TT +   S     P+SS + P  T     +   SS
Sbjct: 465 SSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASS 524

Query: 484 TPSS 495
           T SS
Sbjct: 525 TQSS 528


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 307 TAPASRSYSSMLRLKNASTRPSS-LTTCS*GES*QAP*PTSSRTGPPQTRRGRAAHQPSS 483
           ++ +S + ++    ++ ST PSS +TT +   S     P+SS + P  T     +   SS
Sbjct: 465 SSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASS 524

Query: 484 TPSS 495
           T SS
Sbjct: 525 TQSS 528


>AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical
           protein ZC581.3 protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = -3

Query: 245 LLDLFPHHVVASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRF 66
           LL+L P ++V S    E L   G+   +   +  R      SEDS EN+P  NF Y+   
Sbjct: 460 LLNLTPPNIVNSN-ESEDLEESGEEIQIETTTLKRK---VFSEDSMENTPP-NFFYSSNR 514

Query: 65  FDDTQKN 45
           +D T ++
Sbjct: 515 YDSTTRS 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,229
Number of Sequences: 27780
Number of extensions: 230549
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)