Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0408
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.13 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 435 RAPANTSWESGASALEHALKLESDVTNSI 521
           R P   SW S  + +  A KL+ ++ NSI
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 523 RMLLVTSLSSLRACSRADAPLSHDVFAGALYVMRSV 416
           R+LL++++  +  CS  +  L  D+F G   ++R V
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRGYNKLIRPV 45


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 413 RNRPHHVQGPRKHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPPG 571
           +++P H Q    H     +   +A+PQ  + + QQ P   Q  ++Q Q+   G
Sbjct: 806 QSQPPHQQ-LHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRG 857


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 401 LSPHEQVVNELGRVLAFFSRSIEE 330
           +  H Q+++ L  VLA   R ++E
Sbjct: 362 IDQHSQLIDTLENVLAIVDRLMDE 385


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 418 PTSSRTGPPQTRRGRAAHQPS 480
           P+SS +  P  +   AA QPS
Sbjct: 521 PSSSTSSSPPAKGAAAAGQPS 541


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 152 SCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKNMR 39
           S GRS    E E SKE     + +YN++ +++   + +
Sbjct: 285 SKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKK 322


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 152 SCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKNMR 39
           S GRS    E E SKE     + +YN++ +++   + +
Sbjct: 296 SKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKK 333


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 470 CAALPRRVCGGP 435
           CA  P  +CGGP
Sbjct: 61  CAKGPDELCGGP 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,165
Number of Sequences: 438
Number of extensions: 2749
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)