Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0407
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium (Vinck...    35   1.3  
UniRef50_Q17634 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_A2EC24 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q5JJ20 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q4Y0P7 Cluster: Putative uncharacterized protein; n=2; ...    32   9.2  

>UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium
           (Vinckeia)|Rep: Var1p, putative - Plasmodium yoelii
           yoelii
          Length = 397

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 270 YNSLKKSL---RYSFYYIFLLS*RTI*YYNRLMTMFFFNCGKYVNLINIC 410
           +N LK S    RY+FYYI+L +   I YY++ + + F+N  K   LI  C
Sbjct: 302 FNDLKNSTNNSRYNFYYIYLSN--EINYYDQYLDLHFYNLEKLDYLIKNC 349


>UniRef50_Q17634 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 512

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 156 HKNHTRLWHHLNLW*LTCSIISNISCRYNVPYITKKKSF 40
           +KN  R++ H+ +W    S + + +C +NV YITK+  F
Sbjct: 29  NKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKESLF 67


>UniRef50_A2EC24 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 406

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 32/119 (26%), Positives = 42/119 (35%)
 Frame = -3

Query: 558 KSFNQQINLSILCKNSNIANAIFSLDNVIFIYGPPVMVNT*ITQYVL*ERKYLLDLHTSH 379
           K +   +   + C  SNI + I SLD    +Y      N         E   L +     
Sbjct: 34  KDYETVLTDLVKCGKSNIESLIISLDTYQMVYPNEFPANQSSAPKQRGEPVILQNSAFKA 93

Query: 378 N*KKTSS*DDCNIRWFFMTTKICNKMSISSFFLTNYITESCDAMKTCET*RKFDYKIVP 202
           N K   S        F  TT +      S FF T  + E  D MK C T +K  +  VP
Sbjct: 94  NSKSIKSMKLALKHIFPKTTSLTEICFRSIFFTTEELVELVDLMKECGTLKKIYFDNVP 152


>UniRef50_Q5JJ20 Cluster: Putative uncharacterized protein; n=1;
           Thermococcus kodakarensis KOD1|Rep: Putative
           uncharacterized protein - Pyrococcus kodakaraensis
           (Thermococcus kodakaraensis)
          Length = 336

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 139 TSVVFMKNHHN--YTGADTGFLFGD-NFIIEFPLSFTSFHSVTRFSNI 273
           T + F+ NH N  Y G DT  +    NF+   P + T FH  TRF +I
Sbjct: 161 TVLQFLNNHKNLLYVGEDTVIIDAKRNFVYPTPHTSTFFHHETRFGHI 208


>UniRef50_Q4Y0P7 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 65

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 279 LKKSLRYSFYYIFLLS*RTI*YYNRLMTMFFFNCGKYVNLINIC 410
           LK SL+Y +Y+IF+       YYN+ M  F    G   N+I IC
Sbjct: 22  LKSSLQYDYYFIFITVWFIHIYYNKYMRTFGVQHGGLKNII-IC 64


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,004,330
Number of Sequences: 1657284
Number of extensions: 11446891
Number of successful extensions: 20972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20971
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)