Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0407
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    28   0.92 
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   3.7  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   6.5  

>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 418 EHVLCNLSIHHYRRTVNKYNIVKTEYR 498
           EHVL  L++ +  R V KY+ +++EY+
Sbjct: 28  EHVLEELNLKNIERRVKKYDQIESEYK 54


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 11  ESARGDNILVKDFFFVI*GTLYRHEMLEIIEHV 109
           +S  GDN    DFF  +  TL +H++  I++ V
Sbjct: 272 QSEGGDNHASPDFFHKLQATLKKHDVKFIVDEV 304


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 403 IFAFSEHVLCNLSIHHYRRTVNKYNIVKTEYRICNV*IFT*NRQIYLLVERFLVTIRRST 582
           +F F   +L    +  Y  T  K   +KTEY I +  +    R  Y  ++  L  IR   
Sbjct: 20  LFLFGSLILLLRPLIFYSNTTMKK--LKTEYPIYHRHLSALKRNFYYTMDAQLGGIRNVV 77

Query: 583 IVERSC 600
           ++ R C
Sbjct: 78  LINRPC 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,352
Number of Sequences: 5004
Number of extensions: 53788
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)