Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0407
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38780| Best HMM Match : Astacin (HMM E-Value=0)                     31   0.96 
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 28   5.1  
SB_11750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 1153

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 GFYEEPSQLHGSGYRVFVWGQFYNRISFKFHKF 245
           GFY E S+     Y    W   Y+R  F F+K+
Sbjct: 850 GFYHEQSRPDRDNYVTINWNNIYDRYKFAFNKY 882


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 482 SRLNI--AFAMFEFLHKIDRFICW 547
           S+LN   AFA+ EFL K D ++CW
Sbjct: 676 SQLNYTKAFAITEFLRKEDSYMCW 699


>SB_11750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 162 VLHKNHTRLWHHL 124
           VLH+++ RLWHHL
Sbjct: 128 VLHEHYPRLWHHL 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,540
Number of Sequences: 59808
Number of extensions: 370583
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)