Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0407
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    35   0.052
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    35   0.052
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    29   3.4  
U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 156 HKNHTRLWHHLNLW*LTCSIISNISCRYNVPYITKKKSF 40
           +KN  R++ H+ +W    S + + +C +NV YITK+  F
Sbjct: 29  NKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKESLF 67


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 156 HKNHTRLWHHLNLW*LTCSIISNISCRYNVPYITKKKSF 40
           +KN  R++ H+ +W    S + + +C +NV YITK+  F
Sbjct: 29  NKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKESLF 67


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 65  GTLYRHEM--LEIIEHVSYHRLRWCHRRVWF 151
           G LY  E   LE++E+V ++RL  CH R  F
Sbjct: 187 GPLYGSESKWLEVVEYVEHYRLLECHHRSRF 217


>U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical
           protein R08C7.4 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 65  GTLYRHEM--LEIIEHVSYHRLRWCHRRVWF 151
           G +Y  E   LEIIE+V ++RL  CH R  F
Sbjct: 120 GPMYGEESKWLEIIEYVEHYRLVECHYRSKF 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,733
Number of Sequences: 27780
Number of extensions: 301240
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)