Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0407
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 291 SFFLTNYITESCDAMK-TCET*RKFDYKIVPKQKPCIRSRVIVMVLHKNHTRLWHHLNL- 118
           S+ L  ++ +   AM  TC T   F+   +   +    ++ I    HKN+ R+W  + L 
Sbjct: 251 SWSLPGFVCDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTILLV 310

Query: 117 W*LTCSIISNI 85
           W ++ +I S I
Sbjct: 311 WAISAAIGSPI 321


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 507 IANAIFSLDNVIFIYGPPVMVNT 439
           IAN I S DNV+  Y P   + T
Sbjct: 149 IANKINSWDNVVVAYEPVWAIGT 171


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 183 GYRVFVWGQFYNRISFKFHK 242
           GY +++W      IS KF K
Sbjct: 545 GYMIYIWFTTSGTISEKFRK 564


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 183 GYRVFVWGQFYNRISFKFHK 242
           GY +++W      IS KF K
Sbjct: 598 GYMIYIWFTTSGTISEKFRK 617


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 495  IFSLDNVIFIYGPPVMVNT*ITQYVL 418
            + S ++++  + PP   N  ITQY +
Sbjct: 1190 VMSSESILVSWRPPSQPNGVITQYTV 1215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,195
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)