Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0404
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               31   0.67 
SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  27   8.3  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 455 YCMRSCKTANHYCPQCKAFV 514
           YC ++C +  +YCP CK F+
Sbjct: 425 YCCQTCASNLYYCPLCKTFI 444


>SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 212 YCQSTKEAELDSVPIVHMVAVIPFYF 135
           +C STKE   + +  V + A++PFYF
Sbjct: 56  FCPSTKEFAKNPMNWVDLTAILPFYF 81


>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 518 HRRMLYIEDSNDWLFYTISCNTER 447
           HR   ++  SN W  Y ISCN  R
Sbjct: 223 HRVATHVSGSNKWFPYDISCNLIR 246


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 238 NETGRRWWIIAKVRRRRSWIRYRLFI 161
           N    R W +  V+ RR W   RLF+
Sbjct: 185 NSASSREWTLQSVKNRRGWKTIRLFV 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,443,633
Number of Sequences: 59808
Number of extensions: 337738
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)