Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0404
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    27   6.8  
At2g47360.1 68415.m05912 expressed protein                             27   6.8  
At5g40760.1 68418.m04946 glucose-6-phosphate 1-dehydrogenase / G...    27   9.0  
At3g27300.1 68416.m03412 glucose-6-phosphate 1-dehydrogenase / G...    27   9.0  
At2g21780.1 68415.m02589 expressed protein                             27   9.0  

>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 130 RRVHCQ**N*PSNRGLSLELYCRTQ--HSYLVLIISHTLK 17
           R VH +     SN    L+LYC+T    SYL+ ++  TL+
Sbjct: 328 RYVHIKPLEPDSNSDTDLDLYCKTMSLDSYLMSLVGETLR 367


>At2g47360.1 68415.m05912 expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 486 ITVLNVKHSSVLSPHLRFIWQKIFLDHYSV 575
           IT  + KHS    PH+   W  +FL   SV
Sbjct: 96  ITATDPKHSIAFYPHVSIAWLTLFLVQISV 125


>At5g40760.1 68418.m04946 glucose-6-phosphate 1-dehydrogenase / G6PD
           (ACG12) idential to glucose-6-phosphate 1-dehydrogenase
           (acg12) [Arabidopsis thaliana] GI:5732197
          Length = 515

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 IQLRLLRTLAIIHHRLPVSLLPKHLR 257
           IQ  LL+ L ++    P+SL P+H+R
Sbjct: 271 IQNHLLQVLCLVAMEKPISLKPEHIR 296


>At3g27300.1 68416.m03412 glucose-6-phosphate 1-dehydrogenase / G6PD
           (ACG9) identical to glucose-6-phosphate 1-dehydrogenase
           (acg9) [Arabidopsis thaliana] GI:5732195
          Length = 516

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 IQLRLLRTLAIIHHRLPVSLLPKHLR 257
           IQ  LL+ L ++    P+SL P+H+R
Sbjct: 272 IQNHLLQVLCLVAMEKPISLKPEHIR 297


>At2g21780.1 68415.m02589 expressed protein
          Length = 112

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 177 GTDCSYGGGNPILFSIVASIVSDEIN 100
           G DC  GGG+ I    V+S + +E+N
Sbjct: 47  GGDCGGGGGDKIKHEYVSSRIGNELN 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,804,430
Number of Sequences: 28952
Number of extensions: 220815
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)