Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0403
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41550-4|AAP31434.3|  412|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 512 WSFKRVNSYTFRILFQSR*FTLVNDHNLLS*ISIAVFICV 631
           W F   N++T R+ F    FT+ ND  ++   +    +CV
Sbjct: 278 WYFPNKNTWTVRVRFSGSTFTIENDQGVVVTFTTYNSLCV 317


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 512 WSFKRVNSYTFRILFQSR*FTLVNDHNLLS*ISIAVFICV 631
           W F   N++T R+ F    FT+ ND  ++   +    +CV
Sbjct: 278 WYFPNKNTWTVRVRFSGSTFTIENDQGVVVTFTTYNSLCV 317


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 512 WSFKRVNSYTFRILFQSR*FTLVNDHNLLS*ISIAVFICV 631
           W F   N++T R+ F    FT+ ND  ++   +    +CV
Sbjct: 278 WYFPNKNTWTVRVRFSGSTFTIENDQGVVVTFTTYNSLCV 317


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 512 WSFKRVNSYTFRILFQSR*FTLVNDHNLLS*ISIAVFICV 631
           W F   N++T R+ F    FT+ ND  ++   +    +CV
Sbjct: 278 WYFPNKNTWTVRVRFSGSTFTIENDQGVVVTFTTYNSLCV 317


>U41550-4|AAP31434.3|  412|Caenorhabditis elegans Hypothetical
           protein R04A9.5 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 621 NTAMDIYDNKLWSLTNVNYLLWKSILNV*LFTRLKDHK 508
           N  +  YD K+  L  +N+ L K  L + L  +LK H+
Sbjct: 362 NREIKRYDQKISRLFQLNWRLMKKKLKIGLLRKLKQHR 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,829
Number of Sequences: 27780
Number of extensions: 230984
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)