Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0402
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    27   0.19 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 176 VILEVSSTFLSDSVLSTAAGTVTISIFCSLSIFVL 72
           V L+   T+   S   T    VT  ++CSL+IFVL
Sbjct: 389 VNLKYRETYFRLSKTKTFCTLVTALVYCSLAIFVL 423


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
 Frame = +1

Query: 187 PEIKVDDTEMIEQKLDEQSMIT-------IKEETQGDSSETEN 294
           P  KVD T++  ++ DE++  T       ++EE + + S++ N
Sbjct: 421 PAFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNN 463


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -3

Query: 234 IKFLFNHFCIINFNFWYYQGDIRGVFHFSIRFSFINCCRHSDNFH 100
           +  L   F +IN        D R V  F    +F N  +H  N H
Sbjct: 193 LMILEGRFRVINDGIQALINDSRKVTRFPTELTFCNKIKHLVNLH 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.297    0.119    0.302 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,867
Number of Sequences: 336
Number of extensions: 2111
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.1 bits)