Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0402
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 29 0.47
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.83
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.83
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.1
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 27 2.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 3.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.3
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.8
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 25 7.7
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.7
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.7
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNS 618
+ +ES++ D ++ E D + ++ E + S SDN +SD NS
Sbjct: 351 EANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNS 400
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 481 ESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEP 660
E Q + + E+ +++P + E + Q + +N ++S E QP+V A+E+P
Sbjct: 208 EVEQQSAPNSNGNEEVNNLEPVGQNE--SKQEPPKEENSNVSQEQPEQAQPEVSAASEQP 265
Query: 661 E 663
E
Sbjct: 266 E 266
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.7 bits (61), Expect = 0.83
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSI-SDVNSELPQPKVLN 645
D + +S + D DS+E + D S E K TN+ S + ++ DV + + K+
Sbjct: 225 DPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVNLRSEQKLQP 284
Query: 646 ANEEPEIEKKD 678
+ PE E +D
Sbjct: 285 SFGHPEFENED 295
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 481 ESNQSDSNKEDSQEQALDIK-PSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEE 657
E+N ++S+ + S + +DI+ PS EP++ + S ++ S+ +V PQ + + +
Sbjct: 59 ENNIANSSSQQSVSE-IDIQLPSSEPKEGVKEESNLIESNSLDNVQEINPQNTIGDKSAH 117
Query: 658 PEIEKKDD 681
E E +D
Sbjct: 118 TEEESSND 125
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 472 IQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELP-QPKVLNA 648
++EE+ Q D K + + + + +TN SL+S NY LP P + ++
Sbjct: 201 LKEENTQEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNY--------LPTNPTLTHS 252
Query: 649 NEEPEIEK 672
N+ P E+
Sbjct: 253 NKAPSFEE 260
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 58 PPSEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIK 198
P + +K KID+ + + P +D+ S VE+ I +PE+K
Sbjct: 449 PENILKLKIDTSIFLRLDLSPGMLDRPFSRLHVENIIQILRYLPEVK 495
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 457 DCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSE 621
+ Q DIQE ++Q ED + D+K + + LE + +D N E
Sbjct: 4064 EIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKE 4118
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 160 DTSNITLVIPEIKVDDTEMIEQKLDEQ 240
D + V+P ++ +TE++ QKLD++
Sbjct: 76 DDAGKPYVLPSVRQAETELLSQKLDKE 102
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/76 (17%), Positives = 29/76 (38%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ 630
K +I QEE D+ ++ +P EPE + +N + + + +
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQEQEQE 414
Query: 631 PKVLNANEEPEIEKKD 678
+ ++ E I ++
Sbjct: 415 EEQIDPEEAKRIALRE 430
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 164 VSSTFLSDSVLSTAAGTVTISIFCSLSIFVLTSDGG 57
VSS L+ S+LS++ G + + S F LTS+ G
Sbjct: 3505 VSSVSLNSSLLSSSGGFSSSAFSTGSSSFSLTSENG 3540
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 64 SEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTE 213
+++ +DS+ + P + K D V+ T + VIP+I + D +
Sbjct: 12 AKIANVLDSKGTIIPEAAPVMLKKPAKDESVDSTIQVGDVIPDITLPDED 61
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 547 MEPEKATNQVSLESDNYSISDVNSELPQPKV 639
+ E N + +NYSISD++ + P P +
Sbjct: 93 LHSEHPENNIPPNDNNYSISDLSIKSPPPSL 123
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 220 EQKLDEQSMITIKEETQGDSSE 285
++K DEQS + ET GD+SE
Sbjct: 384 QKKTDEQSNKKLLNETDGDNSE 405
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/79 (16%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKA---TNQVSLESDNYSISDVNSE 621
K + + +++E ++D+N+E+ +++ D + + +++ + + D+ +E
Sbjct: 93 KKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEAE 152
Query: 622 LPQPKVLNANEEPEIEKKD 678
+ + + +EE EI ++D
Sbjct: 153 VDEDEEELEDEEDEIGRED 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.297 0.119 0.302
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,700
Number of Sequences: 5004
Number of extensions: 34103
Number of successful extensions: 85
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
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