Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0402
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 32 0.37
05_01_0146 - 953957-956278,956468-956786,957185-957213 31 1.1
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 2.0
12_01_0065 - 558521-558675,558765-558835,558914-558998,559366-55... 29 3.4
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 28 6.0
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 28 6.0
03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944... 28 6.0
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 7.9
02_05_1244 - 35218220-35218704,35219209-35219290 28 7.9
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 58 PPSEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTEMIEQKLDE 237
P SEV ++D + IVT +++ D+ E T++ DDT + + DE
Sbjct: 126 PSSEVSEEMDDKPIENIVTDDKSIEDVADDKATEGTASYDKATEGKAADDTTVEDNTTDE 185
Query: 238 QSM 246
+S+
Sbjct: 186 RSI 188
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQAL----DIKPSMEPEKATNQVSLESDNYSISDV--NSELPQ 630
D +E+++ +KED E AL D+K +++ K + +V L+ NY I+ + N + +
Sbjct: 513 DKAKEAHERYLSKEDDHEHALAQIGDLKMALKSTKESYEVMLDEANYDITCLRKNVDKLE 572
Query: 631 PKVLNANEEPEIEKKD 678
+V EE E ++ D
Sbjct: 573 AEVNKYREECESKETD 588
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNA 648
D +E +N++D + QE+ + K ++E KAT ++ + N +++++ + + + N
Sbjct: 242 DREERANENDKLFKIKQEELEEAKKALEHTKATLKIKEDDINKRLAELHLQEKEAESKNR 301
Query: 649 NEEPEIEKK 675
E E EKK
Sbjct: 302 KLE-EREKK 309
>12_01_0065 -
558521-558675,558765-558835,558914-558998,559366-559484,
559570-559718,560116-560157,560413-560484,560788-560897,
561446-561535,561633-561747
Length = 335
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 556 EKATNQVSLESDNYSISDVNSELPQPKVLNANEEPEIEK 672
E+ + L+ + S+SD +S + VL A+EEP ++K
Sbjct: 44 ERPVKKAMLDFSSLSVSDPSSAPNKVSVLTASEEPRVKK 82
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 475 QEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANE 654
+E+ + + ++++ +A D+KP E + + N V+ ES +S D + P+ + A
Sbjct: 286 EEKEKKEEPDEKNEGGEADDLKPLTEDDASYNGVAEES--HSTKDHLFRVALPRSVVAVA 343
Query: 655 EPEIEK 672
PE EK
Sbjct: 344 PPESEK 349
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLES 588
D +EE Q + E+ +EQ LD ++E E TN++ ES
Sbjct: 140 DEEEEEEQEAAPAEEDEEQELD-PEAVELEALTNEIDEES 178
>03_06_0631 +
35193737-35193906,35194010-35194076,35194237-35194426,
35194571-35194767
Length = 207
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +1
Query: 475 QEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANE 654
+EE + D N+E+ +E+ D +P + P + + D YSI + ++ L +
Sbjct: 24 EEEVEEEDENEEEEEEEEEDPQPYV-PSRPLPSEEVR-DGYSIREAHAALDYYNANHTGA 81
Query: 655 EPEIEK 672
E E+ K
Sbjct: 82 EYELVK 87
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 478 EESNQSDSNKEDSQEQALDIKPSMEPEKATN-QVSLESDNYSISDVNSELPQPKVLNANE 654
+E N+ + + E+ LD+K S ++ TN QVSL+ + + + S L + K N
Sbjct: 1288 QEENEDLTRRNQLMEKELDLKTSQNKDENTNKQVSLQDE---VLMLQSSLDEAKFENGKL 1344
Query: 655 E 657
E
Sbjct: 1345 E 1345
>02_05_1244 - 35218220-35218704,35219209-35219290
Length = 188
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 112 TVPAAVDKTESDRKVEDTSNITL 180
TVPA V ++S KV DTSN+ +
Sbjct: 67 TVPATVPSSDSGFKVRDTSNLKI 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.297 0.119 0.302
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,457
Number of Sequences: 37544
Number of extensions: 183046
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
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