Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0402
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 36 0.023
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 31 1.1
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 30 1.5
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 29 2.7
SB_23290| Best HMM Match : SRCR (HMM E-Value=0) 29 2.7
SB_22398| Best HMM Match : Ran_BP1 (HMM E-Value=4.6e-10) 29 2.7
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5) 29 3.5
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 29 4.6
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 28 6.1
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 6.1
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 6.1
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 28 6.1
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 28 6.1
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 28 8.1
SB_43638| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.03) 28 8.1
SB_18231| Best HMM Match : HSP9_HSP12 (HMM E-Value=2.4) 28 8.1
SB_58853| Best HMM Match : SNF (HMM E-Value=0) 28 8.1
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84) 28 8.1
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +1
Query: 463 QIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVL 642
+I IQE D K + ++ +P ME E AT + LE D + V E PQP+
Sbjct: 501 EIAIQEMHETRDVIKLEGDSKSEKRQPLMEEEVATVRPQLEED---VEKVKKEQPQPEEE 557
Query: 643 NANEEPEIEKK 675
E+P+ E+K
Sbjct: 558 FKTEQPQPEEK 568
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ 630
KP + + + E D ED E + KP +PEK + + D + + P+
Sbjct: 175 KPKAKSEDKPEDMPEDM-PEDKPEYRPEYKPEDKPEKKPEKKPEDKSEDKPEDKHKDKPE 233
Query: 631 PKVLNANEEPEIEKKDD 681
K+ + E+ + EK +D
Sbjct: 234 DKLEDKPEDKKEEKPED 250
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 478 EESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKV 639
+++ + S+++DS ++KP + +KA + S SD+ S + E P+ KV
Sbjct: 85 KKATKGSSSEDDSSSDEEEVKPKKDAKKAATEDS-SSDDDSSGEDEDEKPKKKV 137
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKAT-NQVSLESDNYSISDVNSELPQPKVLN 645
D ++ + + S+ +DS + D KP + EK T + S+ SD E P+ K N
Sbjct: 109 DAKKAATEDSSSDDDSSGEDEDEKPKKKVEKKTPTKQESSSEEDDSSDDKDEKPKKKADN 168
Query: 646 ANEEPEIEKK 675
++ + +++
Sbjct: 169 KGKKTQAKQE 178
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPE---KATNQVSLESDNYSISDVNSE 621
KP +++ + + Q S++ED D KP + + K T S SD E
Sbjct: 132 KPKKKVEKKTPTKQESSSEEDDSSDDKDEKPKKKADNKGKKTQAKQESSSEDDSSDEEDE 191
Query: 622 LPQPKVLNANEEPEIEKK 675
P+ K N ++ + +++
Sbjct: 192 KPKKKADNKGKKTQAKQE 209
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 463 QIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ-PKV 639
Q I + ++Q + N+E +Q+ + +KP+ ++A+ +V+ E + + +VN E Q K
Sbjct: 1062 QAQINQGASQ-EVNREINQKASQMVKPAQINQEASQEVNREINQEASQEVNQEASQMVKQ 1120
Query: 640 LNANEEPEIE 669
N+E E
Sbjct: 1121 AQINQEASQE 1130
>SB_23290| Best HMM Match : SRCR (HMM E-Value=0)
Length = 478
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 481 ESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSEL 624
+SN+ D S + PS E E A + + ++ D Y++ V+S +
Sbjct: 422 QSNRFDQQPSRSNQLDQQAGPSDEEEGAASNMGMDEDRYAVGSVSSPI 469
>SB_22398| Best HMM Match : Ran_BP1 (HMM E-Value=4.6e-10)
Length = 139
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 457 DCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ-P 633
DCQ I++ + SD N+ D Q L+ E E Q +SD +D E+
Sbjct: 65 DCQKKIKDATPISDDNESDKLVQELEGLKVKEDETKEGQAEDKSDKTEPTDSEKEVDNTS 124
Query: 634 KVLNANEEPE 663
K N +E E
Sbjct: 125 KDENGKKEEE 134
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 466 IDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLN 645
+ + +ES + +KE+S A S+EP+ ++V +E + S+ + P P
Sbjct: 937 VPLDDESQNVEYSKEESSPVA-----SVEPQHEEDEVFIEPADLSMEAPSPVFPSPMSRI 991
Query: 646 ANEEPE 663
+EEPE
Sbjct: 992 FSEEPE 997
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 478 EESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEE 657
EES Q D +KE+S+ ++ E E + S ESD+ + E+ + + EE
Sbjct: 686 EESEQEDDDKEESESES--ESEESEEESEEEEESEESDSEESEEEEEEIKEKDIAEQLEE 743
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 475 QEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNY--SISDVNSELPQPKVLNA 648
+EES +SDS + + +E+ + K E + N++S S+ S++ S P+ +
Sbjct: 714 EEESEESDSEESEEEEEEIKEKDIAEQLEEENKISEASEVLVERASEIGSAKPKDVADKS 773
Query: 649 NEEPEI 666
+ EI
Sbjct: 774 SSNVEI 779
>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
Length = 235
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 PSEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTS-NITLVIPEIKVDDTEMIEQKLDE 237
PS ++TK+ K+++ V V ++V++T+ + T IP+ +VD+T I Q++DE
Sbjct: 128 PSTLRTKLP--HKLDVCIVEHDVFWLYLVQRVDETNGDETSRIPQ-RVDETSRIPQRVDE 184
Query: 238 QSMI 249
S I
Sbjct: 185 TSRI 188
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 544 SMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANE 654
S PE +T Q L D +S SD+ P K L ANE
Sbjct: 326 SAHPEISTFQAPLPPDRFSSSDLLRNKPARKSLPANE 362
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 130 DKTESDRKVEDTSNITLVIPEI-KVDDTEMIEQKLDEQSMITIKEETQGDSSETENKTE 303
DK E D++ D + + E+ K D EM ++++D+Q +++ + D + ENK +
Sbjct: 166 DKEEMDQEEMDKQDKEEMDQEMDKQDKEEMDQEEMDKQDKENKEDKEEMDKQDKENKED 224
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 496 DSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEPEIEKK 675
D+N+E + L KPS P +++ S++ + + S+ P P + + +KK
Sbjct: 67 DNNEESVERDELITKPSKSPSQSSLDSSVDELKIPLVKILSKTPGPSICTPSFTGSFKKK 126
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +1
Query: 493 SDSNKEDSQEQALDIKPSMEPEKATN----QVSLESDNYSISDVNSE 621
SDS++E Q+ +++P M K++N V+L +N+ +S+V+ +
Sbjct: 231 SDSDEEFESFQSSEVQPDMHAVKSSNGSVLPVNLSPNNFHVSNVDGD 277
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 463 QIDIQEESNQSDSNKEDSQEQALDIK--PSMEPEKATNQVSLESDNYSISDVNSELPQPK 636
+I+ ++ +D+ E +EQA IK P P+K ++ + + S +V SE
Sbjct: 99 KIEAAKQEATADNKAEPKKEQASGIKDAPEATPKKGADKATPKEVEASGDEVASEAEAKP 158
Query: 637 VLNANEEPEIEKKD 678
V A E K+D
Sbjct: 159 VEAAKTESNPAKED 172
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 466 IDIQEESNQSDSNKE-DSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVL 642
I+I+ + D+++E DS E+ LD P E +V + DVN E +P+
Sbjct: 781 IEIRLKQINKDADREQDSLEELLDEFPKDRDELVQERVEQQFHENPEWDVNFEDHEPRDH 840
Query: 643 NANE 654
N NE
Sbjct: 841 NRNE 844
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 556 EKATNQVSLESDNYSISDVNSELPQPKVLNANE 654
EK +++LE + SD+ SEL + L ANE
Sbjct: 2973 EKVDLEIALEREKIVTSDLESELETERALQANE 3005
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ 630
K + Q ++ + D NK+DSQ D + + K +Q S++ D DVN +
Sbjct: 408 KDESQRSRDDKEKRPDINKDDSQRSRDDKEKRPDVNKDDSQSSID-DKEKRPDVNKQ-KN 465
Query: 631 PKVLNANEEPEIEKKD 678
K +N + KD
Sbjct: 466 EKYMNVASKDHYMNKD 481
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +1
Query: 481 ESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEP 660
ES D K D+Q + P+++ E T Q + DN ++++ + + P+P L + E
Sbjct: 872 ESGDEDDTKADAQRSETN-SPTLDVE--TQQTA---DNPAMTEKSKKKPKPSALEGSRED 925
Query: 661 EIEKKD 678
+ D
Sbjct: 926 RVVSSD 931
>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
Length = 341
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 460 CQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKV 639
CQI +++ + +S++ K S +P+K +V E D + + E P+
Sbjct: 81 CQIVRLTDADPETQSATESEQAEEKPKESEQPDKPEEEVQKEEDKDGEVEKSEEKPKEAK 140
Query: 640 LNANEEPEIEK 672
E +IE+
Sbjct: 141 AETEESGKIEE 151
>SB_43638| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.03)
Length = 136
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 118 PAAVDKTESDRKVEDTSNITLVIPEIKVDDTEMIEQKLDEQSMITIKEETQGDSSETENK 297
PAA D+T+ + ++ED +N + + + ++TE E + + T +E + + EN
Sbjct: 29 PAAQDETKDEPQLEDQANQLEQVDDSEPEETEEAESE-EVSEYETGSDEDANEVVQAEND 87
Query: 298 TE 303
E
Sbjct: 88 DE 89
>SB_18231| Best HMM Match : HSP9_HSP12 (HMM E-Value=2.4)
Length = 115
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +1
Query: 454 PDCQIDIQEESNQSDSNKEDSQEQALDI------KPSMEPEKATNQVSLESDNYSISDVN 615
PD + D ++S +DS + D+ E D KP P+ N S + D +
Sbjct: 4 PDGRCDDSDKST-TDSTRGDTSESIPDAVCNDTSKPI--PDGVCNDTSKSIPDAVCDDTS 60
Query: 616 SELPQPKVLNANEEPEIEKKD 678
+P P N +E P+I D
Sbjct: 61 KSIPDPVCDNLDESPKISTMD 81
>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
Length = 905
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 157 EDTSNITLVIPEI--KVDDTEMIEQKLDE-QSMITIKEETQGDSSETENKTE 303
E T N+T++IPE D E I K + S+ +K E GD + NK E
Sbjct: 57 ETTENVTIIIPETPDSKDPEENIVTKQEAVVSVKQVKIEETGDRPKWGNKVE 108
>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
Length = 563
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 232 DEQSMITIKEETQGDSSETENKT 300
+E +++ EET+GD SE EN+T
Sbjct: 490 NEDNVLFSDEETEGDKSERENET 512
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.297 0.119 0.302
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,147
Number of Sequences: 59808
Number of extensions: 229991
Number of successful extensions: 544
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
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