Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0402
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.041
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   4.7  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   4.7  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   4.7  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   4.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   4.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   4.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   4.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   4.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 163  TSNITLVIPEIKVDDTEMIEQKLDEQSMITIKEETQGDS 279
            T+N+T ++P +KV   +  +Q   +Q   TI     G S
Sbjct: 960  TTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQAGKS 998


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 216 HFCIINFNFWYYQGDIRGVF 157
           H C INF  W + G+   +F
Sbjct: 181 HRCRINFGSWVHSGEEVNIF 200


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 333 PLYYNINYIEQIPVPVPFPVY 353


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 333 PLYYNINYIEQIPVPVPFPVY 353


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 333 PLYYNINYIEQIPVPVPFPVY 353


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 PLFYQIQFYQLLPAQ*QFPFF 95
           PL+Y I + + +P    FP +
Sbjct: 322 PLYYNINYIEQIPVPVPFPVY 342


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = +1

Query: 469 DIQEESNQSDSNKEDSQEQA 528
           +IQ  +NQ+D+N++++++ A
Sbjct: 422 NIQNTNNQNDNNQKNNKKNA 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.297    0.119    0.302 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,003
Number of Sequences: 438
Number of extensions: 2177
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.1 bits)