Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0402
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31530.1 68415.m03852 secY family protein low similarity to S... 33 0.13
At1g75360.1 68414.m08753 hypothetical protein 33 0.18
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 32 0.31
At1g48380.1 68414.m05404 root hair initiation protein root hairl... 31 0.54
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.71
At5g56270.1 68418.m07022 WRKY family transcription factor 31 0.94
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 31 0.94
At4g31880.1 68417.m04531 expressed protein 31 0.94
At2g22795.1 68415.m02704 expressed protein 31 0.94
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain... 30 1.2
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat... 30 1.2
At3g61570.1 68416.m06896 intracellular protein transport protein... 30 1.6
At5g54095.1 68418.m06735 expressed protein 29 2.9
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof... 29 2.9
At5g13950.1 68418.m01631 expressed protein 28 5.0
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 28 5.0
At2g05082.1 68415.m00531 hypothetical protein 28 5.0
At4g31570.1 68417.m04483 expressed protein 28 6.6
At3g29210.1 68416.m03664 hypothetical protein similar to At1g328... 28 6.6
At2g04450.1 68415.m00449 MutT/nudix family protein similar to SP... 28 6.6
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 27 8.8
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 27 8.8
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro... 27 8.8
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 27 8.8
>At2g31530.1 68415.m03852 secY family protein low similarity to
SP|P31159 Preprotein translocase secY subunit
{Synechococcus sp}; contains Pfam profile PF00344:
eubacterial secY protein
Length = 556
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 219 NHFCIINFNFWYYQGDIRGVFHFSIRFSFINCCRH 115
++ C++ F Y G I G HFS FSF + C H
Sbjct: 231 SYMCMVAIVFLRYSGSISGGLHFSSIFSFCSHCPH 265
>At1g75360.1 68414.m08753 hypothetical protein
Length = 264
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 70 VKTK-IDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTEMIEQKLDEQSM 246
VKTK I K EI ++TES++ VED + ++P +D E + + M
Sbjct: 146 VKTKRISRRTKSEICRPAMEYERTESEKVVEDDESEKQIVPAYFPEDDEEVVVDEANREM 205
Query: 247 ITIKEETQGDSSETENK 297
+T + SET+ +
Sbjct: 206 VTTPGIYRRTKSETKKE 222
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +1
Query: 64 SEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTEMIEQKLDEQS 243
SE T + + A V+ T D VE+T E +V+ E++E K DE++
Sbjct: 27 SEEVTTVSESLPAPVTESQAPVEVTTKDLVVEETEKPIEETEEAQVETPEVVEIKKDEEA 86
Query: 244 MITIKEETQGDSSETENKTE 303
+ + D S+TE E
Sbjct: 87 PVETPVVVE-DESKTEEVVE 105
>At1g48380.1 68414.m05404 root hair initiation protein root hairless
1 (RHL1)
Length = 355
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 463 QIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVL 642
+ + E S+++ S + + D KP +EPE +T D I+ S+LP+ L
Sbjct: 256 KFNFAETSSEASSGESEGNTSDEDEKPLLEPESSTRSREESQDGNGITASASKLPEE--L 313
Query: 643 NANEEPEIEKKD 678
A E +++ KD
Sbjct: 314 PAKRE-KLKSKD 324
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +1
Query: 484 SNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEPE 663
++ SDS+ EDS E++ D KP+ +KA + S +S SD +SE + + + E P+
Sbjct: 213 ASSSDSSDEDSDEESEDEKPAQ--KKADTKASKKSS----SDESSESEEDESEDEEETPK 266
Query: 664 IEKKD 678
+ D
Sbjct: 267 KKSSD 271
>At5g56270.1 68418.m07022 WRKY family transcription factor
Length = 687
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 499 SNKEDSQEQALDIKPSMEPEKATNQVSLESDNYS----ISDVNSELPQPKVLNANEEPEI 666
+N+ S + A ++KP E +++N +E+DN + SDV + V + EE E
Sbjct: 201 NNRSSSHQSAEEVKPGSENIESSNLYGIETDNQNGQNKTSDVTTNTSLETVDHQEEEEEQ 260
Query: 667 EKKD 678
+ D
Sbjct: 261 RRGD 264
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 478 EESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNY-SISDVNSELPQPKVLNANE 654
EE + D+N+ + E+ D+K ++ + +V ES S+ + E + E
Sbjct: 286 EEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKEVESVEETTQEKEEEVKEEGKE 345
Query: 655 EPEIEKKD 678
E E+K+
Sbjct: 346 RVEEEEKE 353
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEP 555
KPD + I+E+ N+S S K+ + DIK EP
Sbjct: 352 KPDVEHQIEEKENESSSVKQADLSKDSDIKEETEP 386
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 475 QEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANE 654
QEE+ + ++ K + +E A + + E E T + S N S +VN+E + + + NE
Sbjct: 593 QEETKEKENEKIEKEESASQ-EETKEKETETKEKEESSSNESQENVNTESEKKEQVEENE 651
Query: 655 E 657
+
Sbjct: 652 K 652
>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 898
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 490 QSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNA 648
Q + + ++ ++ D+K M+ EKA + + S ++SD+ +EL + K NA
Sbjct: 755 QLEEHVKNLEQTVSDLKVEMDKEKAKSTAKVLSLEDTLSDLKTELGKEKAKNA 807
>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK18) mitogen-activated protein
kinase (MAPK)(AtMPK18), PMID:12119167
Length = 603
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = +1
Query: 451 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ 630
+P+ + + + ++ S Q P+ P TNQ +E+ N+ +LP+
Sbjct: 496 RPNTMTNPENRNIEASSFPPKPQNPVHQFSPTEPPAATTNQADVETMNHPNPYFQPQLPK 555
Query: 631 PKVLNANEEPEIEKK 675
LN N I+ K
Sbjct: 556 TDQLNNNTHMAIDAK 570
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 457 DCQIDIQEESNQSDSNKEDSQEQALD-IKPSMEPEKATNQV 576
D Q+ +QEE +S+S KE+ + LD K SME K +++
Sbjct: 210 DFQLSLQEERKRSESFKEELESMRLDKNKTSMEISKMRSEL 250
>At5g54095.1 68418.m06735 expressed protein
Length = 135
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 142 SDRKVEDTSNITLVIPEIKVDDTEMIEQKLDEQSMITIKEETQGDSSETENKTE 303
S K D + E K +TE + Q+ ++ + KEE+ GD +ET + E
Sbjct: 6 SKPKESDIPETEKTVVESKNVETETVSQEKADEVVTEKKEESAGDVAETPKEAE 59
>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 702
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 595 YSISDVNSELPQPKVLNANEEPEIEKKD 678
+S+ ++N EL KV+++ EP+ E+KD
Sbjct: 373 FSLEEINEELGSVKVISSVLEPDYEEKD 400
>At5g13950.1 68418.m01631 expressed protein
Length = 939
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 502 NKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEPEIEKKD 678
N ED +E+ S + N+ +E +NYS S LPQ N ++E D
Sbjct: 499 NHEDREEKQYSSPCSPSRCHSFNRTDVEVNNYSSSIQGQSLPQASFPNEPHASDLEDAD 557
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQV 576
D+ + SDSN ++E+ +D P+ EPEK + V
Sbjct: 39 DVVNDKPASDSNPVVTKEEEIDQTPAGEPEKESPAV 74
>At2g05082.1 68415.m00531 hypothetical protein
Length = 231
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 225 LFNHFCIINFNFWYYQGDIRGVFH-FSIRFSF 133
L+ + ++ FWYY D R V + S+R+SF
Sbjct: 20 LWKYKDVLKDGFWYYMSDFRVVVNTMSVRYSF 51
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 481 ESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEP 660
E+ + N + + + + SM EK ES NY I ++SEL K L A +
Sbjct: 541 ETKEKFINLQVENDTLVAVISSMNDEKKELIEEKESKNYEIKHLSSELCNCKNLAAILKA 600
Query: 661 EIEK 672
E+E+
Sbjct: 601 EVEQ 604
>At3g29210.1 68416.m03664 hypothetical protein similar to At1g32840,
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At2g02210,
At3g32900
Length = 594
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 466 IDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISD 609
I ++E++NQ E+ +++ ++ +E E+ + +E+DN S D
Sbjct: 366 IRMEEKNNQRSEEDEERKQEDEGLERRLEAEEGGLERKVENDNESFED 413
>At2g04450.1 68415.m00449 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 283
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 539 NQAWNQKKQQTRFLWNLII 595
NQ WNQKK+ RF+ N+ +
Sbjct: 218 NQPWNQKKELFRFMANICL 236
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +1
Query: 481 ESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEP 660
ESN +D +ED ++Q+ D+ + E QV + D +V + K EE
Sbjct: 180 ESNDADEEEEDEEKQSDDVDDAEE-----KQVD-DDDEVEEKEVENTDDDKKEAEGKEEE 233
Query: 661 EIEKKDD 681
E E DD
Sbjct: 234 EEEILDD 240
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 85 DSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTEMIEQKLDEQSMITIKEE 264
D+ +K+ V ++ E+ E T T V+D + E+ + E + ++IKEE
Sbjct: 3 DTVEKVPTVVESSSSSTVEASNSAEKTEPTTEKKKWGDVEDDDDEEEAVSELNSLSIKEE 62
Query: 265 TQGDS 279
+ DS
Sbjct: 63 EKPDS 67
>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
protein contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 362
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 469 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDV 612
D + ++ +++SQ + KP E EK + V D+Y + D+
Sbjct: 27 DDDRAGSSTEQEEDESQNLVPESKPGSEGEKVGDIVRFGKDSYFVIDI 74
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 454 PDCQIDIQEESNQSDSNK-EDSQEQALDIKPSMEPEKATNQVSL 582
PD IDI E N DSN + Q Q S++ EK T Q SL
Sbjct: 385 PDQDIDITESDNNDDSNDLLEGQRQYNSAIHSIQ-EKVTEQPSL 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.297 0.119 0.302
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,693
Number of Sequences: 28952
Number of extensions: 164685
Number of successful extensions: 350
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
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