Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0400
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 274 5e-74
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 273 8e-74
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 260 8e-70
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 250 6e-67
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 30 1.6
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 30 2.1
11_08_0063 - 28125067-28125969 29 2.8
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 29 4.9
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 29 4.9
09_04_0261 + 16207565-16207825,16207935-16208087,16208191-162083... 28 8.6
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 28 8.6
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886... 28 8.6
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 274 bits (672), Expect = 5e-74
Identities = 127/175 (72%), Positives = 146/175 (83%)
Frame = +3
Query: 30 YKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSV 209
+K +FE AGIWYEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSV
Sbjct: 235 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSV 294
Query: 210 LICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKN 389
L+CPDGKT+EAEAAHGTVTRHFR +Q+G ETSTN IASIFAWTRGL HRAKLD+N L +
Sbjct: 295 LVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLD 354
Query: 390 FAETLEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLKVAL 554
FA LE C+ T+ESG MTKDLA+ I G +NV RS Y T EF+D +A L+ L
Sbjct: 355 FALKLEAACVGTVESGKMTKDLALLIHGSSNVTRSHYLNTEEFIDAVAAELRSRL 409
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 273 bits (670), Expect = 8e-74
Identities = 124/176 (70%), Positives = 147/176 (83%)
Frame = +3
Query: 27 EYKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTS 206
++K +FE AGIWYEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTS
Sbjct: 234 QWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTS 293
Query: 207 VLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALK 386
VL+CPDGKT+EAEAAHGTVTRH+R +Q+G ETSTN IASIFAWTRGL HRAKLD+N L
Sbjct: 294 VLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLL 353
Query: 387 NFAETLEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLKVAL 554
+F + LE CI +ESG MTKDLA+ + G +NV RS Y T EF+D +A+ L+ L
Sbjct: 354 DFTQKLEAACIGAVESGKMTKDLALLVHGSSNVTRSHYLNTEEFIDAVADELRSRL 409
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 260 bits (637), Expect = 8e-70
Identities = 121/174 (69%), Positives = 145/174 (83%)
Frame = +3
Query: 24 QEYKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMT 203
+++K++FE+ IWYEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLM+
Sbjct: 267 EKWKEKFEENSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMS 326
Query: 204 SVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDAL 383
SVL+ DGKT+EAEAAHGTVTRHFR +Q+G+ETSTN IASIFAWTRGL HRAKLD ND L
Sbjct: 327 SVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNDRL 386
Query: 384 KNFAETLEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLK 545
+F + LE CIET+ESG MTKDLA+ I G V R Y T EF+D +A+ L+
Sbjct: 387 LDFTKKLESACIETVESGKMTKDLALLIHG-PKVTREFYLNTEEFIDAVAQQLR 439
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 250 bits (613), Expect = 6e-67
Identities = 115/164 (70%), Positives = 136/164 (82%)
Frame = +3
Query: 63 YEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEA 242
YEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+CPDG+T+EA
Sbjct: 307 YEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDGRTIEA 366
Query: 243 EAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIE 422
EAAHGTVTRH+R +Q+G ETSTN IASIFAWT GL HRAKLD+N L +F + LE C+
Sbjct: 367 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLEAACVG 426
Query: 423 TIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLKVAL 554
T+ESG MTKDLA+ + G NV R Y T EF+D +AE+L+ L
Sbjct: 427 TVESGKMTKDLALLVHG-PNVSRDKYLNTVEFIDAVAEDLRTRL 469
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 102 MKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAE 245
++S W YD S ++A+ + + T V++ PDGKTV E
Sbjct: 376 LRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTRE 423
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +3
Query: 138 NYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKE 299
N DG+VQ S+A YG GL + + G G H+ Y KE
Sbjct: 103 NDDGEVQVFSLADAYGGDGLFSGARMEDSGCIAGGYEVDGRTVDHYLVYVSTKE 156
>11_08_0063 - 28125067-28125969
Length = 300
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 138 NYDGDVQSDSVAQGYGSLG--LMTSVLICPDGKTVEAEA--AHGTVTR-HFRFY 284
++ G D +A+ G G L+T+ + C DG+ EA A G + R H RFY
Sbjct: 157 DHGGSANYDELAKRLGEHGGVLLTATVRCMDGQETSGEAAVATGLIGRIHVRFY 210
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 222 DGKTVEAEAAHGTVTRHFRFYQQGKETSTN 311
DGKT+EA + HG V + F+ + +E N
Sbjct: 326 DGKTIEAMSVHGDVRKLFKSISEVEEKDGN 355
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 222 DGKTVEAEAAHGTVTRHFRFYQQGKETSTN 311
DGKT+EA + HG V + F+ + +E N
Sbjct: 326 DGKTIEAMSVHGDVRKLFKSISEVEEKDGN 355
>09_04_0261 +
16207565-16207825,16207935-16208087,16208191-16208316,
16208595-16208847,16209303-16209485,16209486-16209582,
16209706-16209769,16209904-16210053,16210215-16210387,
16210497-16210536,16211170-16211223
Length = 517
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +3
Query: 234 VEAEAAHGT-----VTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAE 398
+EA A HG R+ R ++ T+T P S+F R L D+N + +
Sbjct: 64 IEATARHGARKENPKVRNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNKKILFYGS 123
Query: 399 TLEK-VC 416
TL+K +C
Sbjct: 124 TLQKAIC 130
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 105 KSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAA 251
+S G W + D + +A+ + GL T VLI PDGKT+ A
Sbjct: 248 ESFAGMPWLAIPQE-DKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVA 295
>01_06_1525 +
37988037-37988237,37988315-37988410,37988508-37988620,
37988739-37988805,37988891-37988983,37989095-37989238,
37989681-37989769,37989912-37990017,37990224-37990311,
37990395-37990513,37990786-37990950,37991222-37991406,
37991568-37991668,37991960-37992069,37992287-37992394,
37992596-37992706,37992791-37993002,37993087-37993423,
37993593-37993619,37993767-37993877
Length = 860
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 210 LICPDGKTVEAE--AAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHR 356
L CP GK++ + + G + R YQQG N I+ + T G HR
Sbjct: 773 LSCPKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKGTLGWAHR 823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,872
Number of Sequences: 37544
Number of extensions: 352694
Number of successful extensions: 719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -