Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0400
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     215   4e-56
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               193   1e-49
SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)                     29   5.0  
SB_44896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            28   6.7  
SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45)             28   8.8  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  215 bits (524), Expect = 4e-56
 Identities = 100/151 (66%), Positives = 119/151 (78%)
 Frame = +3

Query: 24  QEYKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMT 203
           +EY+ QF++ GIWYEHRLIDDMVAYA+KSEGGFVWA KNYDGDVQSD++AQ         
Sbjct: 222 REYESQFKELGIWYEHRLIDDMVAYALKSEGGFVWAAKNYDGDVQSDTLAQ--------- 272

Query: 204 SVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDAL 383
                 DGKT+E+EAAHGTVTRH+R +Q+G ETSTNPIASIFAWT+GL HRAKLD N  L
Sbjct: 273 ------DGKTIESEAAHGTVTRHYREHQKGNETSTNPIASIFAWTQGLSHRAKLDGNPEL 326

Query: 384 KNFAETLEKVCIETIESGIMTKDLAICIKGM 476
           K F + LEK C++T++ G MTKDLA CI G+
Sbjct: 327 KKFCKALEKACVDTVDQGKMTKDLAACIYGL 357


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  193 bits (471), Expect = 1e-49
 Identities = 81/99 (81%), Positives = 96/99 (96%)
 Frame = +3

Query: 24  QEYKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMT 203
           +EYK +FE++ IWYEHRLIDDMVA+A+K+EGGF+WACKNYDGDVQSDSVAQG+GSLG+MT
Sbjct: 174 REYKSKFEESNIWYEHRLIDDMVAFALKTEGGFIWACKNYDGDVQSDSVAQGFGSLGMMT 233

Query: 204 SVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIA 320
           SVL+CPDGKTVE+EAAHGTVTRH+R +QQGKETSTNP+A
Sbjct: 234 SVLVCPDGKTVESEAAHGTVTRHYRMHQQGKETSTNPVA 272


>SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)
          Length = 197

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 448 LVIIPDSIVSMQTFSRVSAKFFKASLLSNLARCNKPLVQAKIEAIGLVDVSFPC 287
           L+ IP+SIV +   SR  +  F  +++  +AR N+ L+      +   D  F C
Sbjct: 130 LIPIPNSIVYIGILSRSDSLNFDMTIVVFIARENRFLILQNFRYLSFPDTIFSC 183


>SB_44896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 192 PVTHSP-EQHYQIVRLHHNFCRPRQIHPLIS-*HKPP 88
           P  HSP + HY    + H++C    + PL+S  H PP
Sbjct: 67  PYCHSPVDHHYFHSTMDHHYCHSLVVLPLLSLTHGPP 103


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 335 PSKN*SNWIGGCLFSLLIESEMTCNSAMGSFSLNCFAIRTNENRCH 198
           PSK  SNW    LF    +++   N A  + +  C   +T  N CH
Sbjct: 514 PSKTQSNWYHPSLFVPPYKTKANLNQASKTQANWCHPYKTQANWCH 559


>SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45)
          Length = 348

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 272 MTCNSAMGSFSLNC---FAIRTNENRCHE 195
           MTC++  GSF  NC   F++  ++  C E
Sbjct: 235 MTCSNTQGSFECNCKKGFSLSADKKSCRE 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,789,562
Number of Sequences: 59808
Number of extensions: 410120
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)