Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0400
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   298   2e-81
Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   254   5e-68
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF025469-2|AAG00033.2|  470|Caenorhabditis elegans Taf (tbp-asso...    28   5.9  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  298 bits (732), Expect = 2e-81
 Identities = 137/174 (78%), Positives = 154/174 (88%), Gaps = 2/174 (1%)
 Frame = +3

Query: 27  EYKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTS 206
           EY+ +F+ AGIWYEHRLIDDMVA AMKS+GGFVWACKNYDGDVQSDSVAQGYGSLGLMTS
Sbjct: 233 EYEAEFKAAGIWYEHRLIDDMVAQAMKSDGGFVWACKNYDGDVQSDSVAQGYGSLGLMTS 292

Query: 207 VLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALK 386
           VL+CPDGKTVEAEAAHGTVTRH+R +Q+G+ETSTNPIASIFAW+RGL HRA LD N AL+
Sbjct: 293 VLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRATLDKNSALE 352

Query: 387 NFAETLEKVCIETIESGIMTKDLAICIKGMN--NVKRSDYYETFEFMDKLAENL 542
            FA  LE VCIET+E+G +TKDLAIC+KG N   V R+DY  TFEF+DKLAENL
Sbjct: 353 TFANNLEAVCIETMEAGFLTKDLAICVKGGNASAVTRTDYLNTFEFLDKLAENL 406


>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  254 bits (622), Expect = 5e-68
 Identities = 116/170 (68%), Positives = 138/170 (81%), Gaps = 1/170 (0%)
 Frame = +3

Query: 24  QEYKKQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMT 203
           ++Y+  F++  IWYEHRLIDD VA A+KS GGFVWACKNYDGDVQSD VAQGYGSLGLM+
Sbjct: 255 KKYEADFKNNKIWYEHRLIDDQVAQALKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMS 314

Query: 204 SVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDAL 383
           SVL+CPDGKT+EAEAAHGTVTRH+R +Q+G  TSTNPIASIFAWTRGL HR  LDNN+AL
Sbjct: 315 SVLMCPDGKTIEAEAAHGTVTRHYREHQKGNSTSTNPIASIFAWTRGLHHRGVLDNNEAL 374

Query: 384 KNFAETLEKVCIETIESGIMTKDLAICIKG-MNNVKRSDYYETFEFMDKL 530
           K F+ TLEK CI+T+E G MTKDL+ICI G     ++  Y  T +F+  +
Sbjct: 375 KTFSLTLEKACIDTVEEGKMTKDLSICIHGTKKGTEKGAYLITEDFLSAI 424


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
 Frame = +3

Query: 300 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 476
           T+T+PI SI      +L+RAKL     ++  + + ++VC+E  E  +  KD  + C +  
Sbjct: 21  TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77

Query: 477 NNV--KRSDYYETFEFMDKLAEN 539
           +++  + +D  + F+  D + E+
Sbjct: 78  SSITSRPNDLKKCFDEKDNILED 100


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
 Frame = +3

Query: 300 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 476
           T+T+PI SI      +L+RAKL     ++  + + ++VC+E  E  +  KD  + C +  
Sbjct: 21  TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77

Query: 477 NNV--KRSDYYETFEFMDKLAEN 539
           +++  + +D  + F+  D + E+
Sbjct: 78  SSITSRPNDLKKCFDEKDNILED 100


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 192  PVTHSPEQHYQIVRLHHNFCRPRQIHPLIS 103
            PVT +PE+H + V+L HN   P  + PL++
Sbjct: 1208 PVTVTPEEHAEQVQLLHNLQNPSILRPLLN 1237


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +3

Query: 153 VQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFA 332
           + S  +  G G + L+T  L    G  V  + A+ TVT+HF   ++  +T    + S+FA
Sbjct: 159 IGSSCMIVGAGIIALIT-FLTAGQGSEVAMDLANATVTQHFE--RRFSDTEIYLLFSVFA 215

Query: 333 WTR--GLLHRAKLDNNDALKNFAETLEKV 413
                G +  A L +ND + N  E+ +K+
Sbjct: 216 AISFVGCITFALLPSND-IGNCIESSKKI 243


>AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical
           protein Y36E3A.1 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = +3

Query: 291 GKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIK 470
           G   S  PI S+F + + L+H+ ++  +DA+K   E L+K     ++ G    ++A  I+
Sbjct: 255 GIGNSILPIQSLFHFEKFLIHKLRITVDDAIK-IKEMLDKP--NNLKDGYFRVEIANKIE 311

Query: 471 -----GMNNVKRSD----YYETFEFMDKLAENLKVAL 554
                G + + R+     YY+T E +  L + + +AL
Sbjct: 312 LARVFGTDYIDRNGEITMYYQTEERLKYLIKFIPIAL 348


>AF025469-2|AAG00033.2|  470|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 6.1
           protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +3

Query: 294 KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIKG 473
           K T ++   S     R  +  AK+D    LK    T+E   I T+E  I  KD+     G
Sbjct: 189 KNTPSSSTTSSLQMFRDAVKTAKIDQKVGLK--PSTIE---ILTVEQQIFMKDIITVCMG 243

Query: 474 MNNVKRSDYYETFE 515
            ++ KR +   T E
Sbjct: 244 QDDKKRHEALYTLE 257


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
            protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 276  RFYQQG-KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKD 452
            R Y++  KE     I  I  WT+ +  +   DN+   K +  T+E V + TI+   +T+ 
Sbjct: 966  RLYEEKEKEQRKKQIKGIEKWTKSMDFK---DNHKTAKFYNTTIENVNVTTIDKDHITES 1022

Query: 453  LA 458
             A
Sbjct: 1023 YA 1024


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,001
Number of Sequences: 27780
Number of extensions: 318261
Number of successful extensions: 682
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)