Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0400
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.31 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.31 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 133 AKIMMETYNLIVLLRAMGHWA 195
           A + M  +NLI ++  +GHW+
Sbjct: 273 ASVFMRIFNLICMMLLIGHWS 293


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 133 AKIMMETYNLIVLLRAMGHWA 195
           A + M  +NLI ++  +GHW+
Sbjct: 241 ASVFMRIFNLICMMLLIGHWS 261


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 239 G*SCPWHCYTSFQILSARKRDIHQ 310
           G  C WHC+   Q      +D+ Q
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,698
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)