Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0399
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   3.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.0  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   6.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.7  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +1

Query: 13  RHEAPLISVLRRRPQSVSY*RYHVVKWL*YPSGYDVH 123
           RH   L    RRR   V +       W+  P GYD +
Sbjct: 262 RHRKNLKDPCRRRQMYVDFGSVGWNDWIVAPLGYDAY 298


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 609 CKTISTFVQENYFHLNYKYAFIHRS 535
           C+    F+   YF    K AFIHR+
Sbjct: 317 CELYMAFMDRLYFSNLDKDAFIHRT 341


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 564 LNENNSPERM*R*FYNCLQKRDTLS 638
           L E    +R+ + ++NCL +R T S
Sbjct: 33  LEEILKSDRLLKNYFNCLMERGTCS 57


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 470 YVVKRLVFDLYFLFNYFNVLMFE 538
           Y+V  L+FD Y   +   V MF+
Sbjct: 123 YMVLLLLFDAYLWISSVGVRMFQ 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,580
Number of Sequences: 336
Number of extensions: 3236
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)