Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0399
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    29   0.76 
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.3  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   9.3  

>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 74  DTML*SGCD-IQVDMMSTYEILASETGRFGFSMSICSIFGSLQEKVTNYER*RHNLKDF- 247
           D ML  GC  +++ + S YE +A +T R     ++C  F   ++  T Y+   H + D  
Sbjct: 230 DEMLRYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCETFQLAKD--TGYKVVTHMMPDLP 287

Query: 248 HVGLCR 265
           +VG+ R
Sbjct: 288 NVGMER 293


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 602 LSLHSFRRIIFI*TINMLLFTVQT 531
           LS+ SF R+ ++  + +LLF VQT
Sbjct: 551 LSIESFSRLSYLLEVQILLFNVQT 574


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 154  TPRFRGQNLVSGHHIHLDITATLQHGIVNTTR 59
            +P     N+  G  + LD+T  + HG + T +
Sbjct: 1563 SPTINRANVYVGFQVQLDLTGIMMHGKIPTLK 1594


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 302 KSHSKLMNTIDTPDITQHENLSNYDVIVHN 213
           K H KL ++I +   TQHE  +  + I+H+
Sbjct: 145 KKHVKLNSSISSIRFTQHEFEAESEKIIHH 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,851
Number of Sequences: 5004
Number of extensions: 54214
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)