Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0399
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15442| Best HMM Match : rve (HMM E-Value=0.00084) 29 2.4
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_45193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 7.5
SB_33541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_39734| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_17708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7097| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 27 9.9
SB_20341| Best HMM Match : Albicidin_res (HMM E-Value=0.53) 27 9.9
SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08) 27 9.9
>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
Length = 822
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 179 NILTSRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
N + S+TR+A P+P+ ++ GYH + T W
Sbjct: 676 NYVESKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 710
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 396 INYKTLKKDISSSQIILCKE-RIDLVMSLSVSFSTYTFYL 512
INY+ K Q++L K+ +++ SLS F+ YTFY+
Sbjct: 500 INYQPADKSSKELQVVLAKDFTSEVIRSLS-GFTKYTFYV 538
>SB_45193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 287 LMNTIDTPDITQHENLSNYDVIVHNL*LFLEGSRILNILTSRTRNA-PFPRPKSRKWTSY 111
L IDT D + N V N+ + I + + S+TR+A P+P+ ++
Sbjct: 174 LAGYIDTADEDKGNAYGNDGVTDRNV----RDTNIEDDVESKTRSALPYPKTHKSDPVAF 229
Query: 110 PLGYHSHFTTW 78
GYH + T W
Sbjct: 230 IRGYHEYMTEW 240
>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1227
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 296 VIY*MKLTQIQRQKLGHLTAFNLSVEVDTSIYYY*LQNLKKRYKQFTDNTL 448
V+Y L++ ++ T + VE D + YY ++NL+ Y+ DN L
Sbjct: 314 VLYPRALSEALLFEITLATVDQVVVESDATKLYYGIKNLELEYESLRDNNL 364
>SB_33541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 133 NLVSGHHIHLDITATLQHGIVNTTRSAAFVVKPILMVPR 17
+ V H I L T+ L G NT+ + VVKP ++P+
Sbjct: 241 DFVDDHSILLQTTSYLLMGTENTSETCIGVVKPQKIIPK 279
>SB_39734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 39 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 69
>SB_17708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 52 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 82
>SB_7097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 68 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 98
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 129 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 159
>SB_20341| Best HMM Match : Albicidin_res (HMM E-Value=0.53)
Length = 173
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 18 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 48
>SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 58 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 88
>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
Length = 1259
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 167 SRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 78
S+TR+A P+P+ ++ GYH + T W
Sbjct: 274 SKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,941,142
Number of Sequences: 59808
Number of extensions: 382238
Number of successful extensions: 807
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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