Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0399
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-7|CAB01454.2|  547|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U88311-5|AAB42343.1|  531|Caenorhabditis elegans Udp-glucuronosy...    30   1.2  
AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying de...    30   1.2  
AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical ...    30   1.6  
U97003-1|AAB52270.2|  527|Caenorhabditis elegans Udp-glucuronosy...    29   2.1  
Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF273810-1|AAG15159.1|  150|Caenorhabditis elegans nuclear recep...    28   4.9  
AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear recep...    28   4.9  
AC025716-15|AAO21409.1|  521|Caenorhabditis elegans Udp-glucuron...    28   6.5  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    27   8.6  

>Z78019-7|CAB01454.2|  547|Caenorhabditis elegans Hypothetical
           protein ZK863.3 protein.
          Length = 547

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 68  INDTML*SGCDIQVDMMSTYEILASETGRFGFSMSICSIFGSLQEKVTNYER*RHNLKDF 247
           +ND +L     +++ + STYE +A +T R     S+C  F     K T Y+   H + D 
Sbjct: 228 LNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFH--MAKDTGYKVVIHMMPDL 285

Query: 248 -HVGLCR 265
            +VGL R
Sbjct: 286 PNVGLER 292


>Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical
           protein C50H2.2a protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 338 VFVVVFELISFNKSHSKLMNTIDTPDI 258
           VFV+V   I F KSH +L+ TID  D+
Sbjct: 196 VFVIVLSAIKF-KSHQRLLKTIDMVDV 221


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 338 VFVVVFELISFNKSHSKLMNTIDTPDI 258
           VFV+V   I F KSH +L+ TID  D+
Sbjct: 162 VFVIVLSAIKF-KSHQRLLKTIDMVDV 187


>U88311-5|AAB42343.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein25 protein.
          Length = 531

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 100 ITATLQHGIVNTTRSAAFVVKPILMVP 20
           +TA + HG + +T   AF+ KP LMVP
Sbjct: 368 LTAFMTHGGLGSTNELAFLGKPALMVP 394


>AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying
           defective EGL-47A protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 338 VFVVVFELISFNKSHSKLMNTIDTPDI 258
           VFV+V   I F KSH +L+ TID  D+
Sbjct: 196 VFVIVLSAIKF-KSHQRLLKTIDMVDV 221


>AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical
           protein H10D18.6 protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 100 ITATLQHGIVNTTRSAAFVVKPILMVP 20
           +TA L HG + +T  AAF+ KP +M P
Sbjct: 204 LTAFLTHGGLGSTNEAAFLGKPSIMFP 230


>U97003-1|AAB52270.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein32 protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 100 ITATLQHGIVNTTRSAAFVVKPILMVP 20
           +TA L HG + +T  AAF+ KP +M P
Sbjct: 368 LTAFLTHGGLGSTNEAAFLGKPSVMFP 394


>Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical
           protein W01D2.2b protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 PRKRGVSGSRCQYVQYSGAFKKKLQ 212
           P+  G  G R +YV YSG  +K L+
Sbjct: 277 PKSEGKHGVRIEYVDYSGVSQKSLE 301


>AF273810-1|AAG15159.1|  150|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 150

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 PRKRGVSGSRCQYVQYSGAFKKKLQ 212
           P+  G  G R +YV YSG  +K L+
Sbjct: 12  PKSEGKHGVRIEYVDYSGVSQKSLE 36


>AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 PRKRGVSGSRCQYVQYSGAFKKKLQ 212
           P+  G  G R +YV YSG  +K L+
Sbjct: 280 PKSEGKHGVRIEYVDYSGVSQKSLE 304


>AC025716-15|AAO21409.1|  521|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein31 protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 100 ITATLQHGIVNTTRSAAFVVKPILMVP 20
           ++A L HG + +T   AF+ KP ++VP
Sbjct: 368 VSAFLTHGGLGSTNELAFIGKPSIIVP 394


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 100 ITATLQHGIVNTTRSAAFVVKPILMVP 20
           ++A L HG + +T   A+  KP +MVP
Sbjct: 372 LSAFLTHGGLGSTNELAYCAKPAVMVP 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,319
Number of Sequences: 27780
Number of extensions: 296785
Number of successful extensions: 641
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)