Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0399
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query: 101 IQVDMMSTYEILASETG------RFGFSMSICSIFGSLQEKVTNYER 223
           + V  ++T+ +LA+ T       RFG  +S  +++G+L  K     R
Sbjct: 561 VLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRIAR 607


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query: 101 IQVDMMSTYEILASETG------RFGFSMSICSIFGSLQEKVTNYER 223
           + V  ++T+ +LA+ T       RFG  +S  +++G+L  K     R
Sbjct: 651 VLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRIAR 697


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 125 KWTSYPLGYHSHFTTW 78
           +WT YP G  ++   W
Sbjct: 27  EWTKYPFGAEANTPGW 42


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 92  HFTTWYR*YDTLCGLRRKTDI 30
           HF TWY+    L G  R++++
Sbjct: 363 HFITWYKDGRQLPGTGRQSEL 383


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 92  HFTTWYR*YDTLCGLRRKTDI 30
           HF TWY+    L G  R++++
Sbjct: 363 HFITWYKDGRQLPGTGRQSEL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,204
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)