Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0399
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18460.1 68414.m02303 lipase family protein similar to triacy...    31   0.87 
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    28   6.1  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    28   6.1  
At4g12070.1 68417.m01919 expressed protein                             27   8.1  

>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 161 TRNAPFPRPKSRKWTSYPLGYHSHFTTW 78
           T  +P  +   R W S P  Y SH+T W
Sbjct: 107 TPPSPLSQSSLRSWASLPANYESHWTDW 134


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  SGCDIQVDMMSTYEILASETGRFGFSMSICSIFGSLQE 202
           S  ++  D+M    +LA  TG   FS S+C +F S  E
Sbjct: 707 SYAELLQDLMEKTLVLALATGNKKFSASLCKLFESYAE 744


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  SGCDIQVDMMSTYEILASETGRFGFSMSICSIFGSLQE 202
           S  ++  D+M    +LA  TG   FS S+C +F S  E
Sbjct: 709 SYAELLQDLMEKTLVLALATGNKKFSASLCKLFESYAE 746


>At4g12070.1 68417.m01919 expressed protein
          Length = 483

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 247 SCWVMSGVSMVFINLECD-LLNEINSNTTTKTGSLNSL 357
           SC   +GV +VF+N++ + LL +I+  T + T +  SL
Sbjct: 215 SCSQANGVPIVFMNIQTESLLTKISGETASATVNTTSL 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,737
Number of Sequences: 28952
Number of extensions: 262986
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)