Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0398
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    27   2.6  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    27   3.5  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   3.5  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.0  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 256 SAESSSSAGDRDRKEHEKRNIRNS 327
           S  SSSS  DRDR E  KR++  S
Sbjct: 12  SLNSSSSNMDRDRSESPKRHVNGS 35


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 253 YSAESSSSAGDRDRKEHEKRNIRNSP--EQWEDDEVXXXXXXXRITKISIGFNKPKAPIK 426
           Y ++ +S+A     K+ EKR + + P   + +D E        R +  S+   +P  P+K
Sbjct: 131 YDSQEASAAARNLVKKVEKRELHSRPPKRKLDDVESKQILKEARASDASLNAERPLFPVK 190

Query: 427 MNLN 438
             +N
Sbjct: 191 KIIN 194


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 308 KEIFAIRQNNGKMMRYQHHLHRLVL 382
           KEI AIR       + + HLHR+ L
Sbjct: 225 KEIIAIRSKTSNCFKKKDHLHRMCL 249


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = -2

Query: 171 ILPRIITRGSRRPFAVEGVTTAHSCFFFTFVTIVLNLTLVGTYFVQFKRITSC 13
           I+ ++ + GSR+ +   G+  +  C  F     ++ +      FVQ +    C
Sbjct: 251 IISKVSSYGSRQTYPPSGIDDSSYCSMFVETEFIVEIAQTVFSFVQVRGTVPC 303


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 265 SSSSAGDRDRKEHEKRNIRNSPEQWED 345
           S +     D++EH +R+ RN    W +
Sbjct: 188 SDNEQHSSDKREHSRRSYRNDRNNWRE 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,312
Number of Sequences: 5004
Number of extensions: 48369
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)