Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0398
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916...    29   2.7  
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762...    29   2.7  
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708...    29   3.6  
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    28   8.4  

>11_03_0042 -
           9167881-9168075,9168159-9168251,9168328-9168409,
           9168495-9168605,9171653-9171898,9172448-9173073,
           9173402-9173422
          Length = 457

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 581 QIHLAKQSKASATLRKYLRRTSKKHWRQW 667
           Q HL  Q  + A  R +  +T   HWRQW
Sbjct: 118 QEHLIYQPGSEALSRNFALQTISHHWRQW 146


>06_01_0982 +
           7627420-7628141,7628190-7628643,7629167-7629823,
           7629975-7630469
          Length = 775

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 696 LWEIGQCWL-VHCLQCFFEVL 637
           LWE+ QCW+ V+ + CFF  L
Sbjct: 447 LWEMRQCWVPVYFMHCFFPFL 467


>01_01_0898 +
           7078900-7079079,7080269-7080301,7080480-7080653,
           7080866-7083890,7084253-7084596
          Length = 1251

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 561 FSPYIPHSHSGFSRHLFRFVIIIISIKHG 475
           FSP +  SHS  SRH  RF++ ++++  G
Sbjct: 893 FSPCLQKSHSN-SRHFLRFLLPVVTVAFG 920


>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 615 AEALLCFAK*IWSSRCWSFSPYIPHSHSGFSRHL 514
           A+ +L   +  W       +PY  H H GF +HL
Sbjct: 257 ADKVLAIVQETWLDPALGLTPYDVHKHVGFLKHL 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,073
Number of Sequences: 37544
Number of extensions: 302719
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)