Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0398
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37680| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-14)                 32   0.52 
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     28   6.5  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_52772| Best HMM Match : rve (HMM E-Value=0.001)                     28   8.5  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   28   8.5  

>SB_37680| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-14)
          Length = 457

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 600 CFAK*IWSSRCWSFSPYIPHSHSGFSRHLFRFVII 496
           CF+  I S   +    Y+P   SGFSR LF FV+I
Sbjct: 214 CFSLLITSHNVYEAPAYLPIRVSGFSRCLFEFVLI 248


>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 186 FPVPLILPRIITRGSRRPFAVEGVTTAHS-CFFFTFVTIVLN 64
           F VP ILPRI+ +   + FAV G +T+ + C+       VL+
Sbjct: 242 FTVPRILPRILVKLDPKQFAVGGKSTSQAVCYILHLFLDVLD 283


>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 221 GHQGNTLQRGITLQRVLRAPGTEIGKNMKKEIFAIRQNNGKMMRYQHHLHRL 376
           G  GN L+    L++ + APG  +  N + +   + + N +++  Q HL  L
Sbjct: 81  GQGGNNLRGHRPLRQTVSAPGYSLSDNPQIQQQQVLKQNQELLHQQQHLQFL 132


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 555  PYIPHSHSGFSRHLFRFVI 499
            PY+P   SGFSR LF FV+
Sbjct: 1151 PYLPIHVSGFSRCLFEFVL 1169


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 555  PYIPHSHSGFSRHLFRFVI 499
            PY+P   SGFSR LF FV+
Sbjct: 1269 PYLPIHVSGFSRCLFEFVL 1287


>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 646

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 520 ASLQVRHHHHQY*TRTPHSVSERV 449
           A  + +H HHQ   RTP +++ER+
Sbjct: 60  ADTRCQHEHHQEPARTPSALAERI 83


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 633 KYFL-SVAEALLCFAK*IWSSRCWSFSPYIPHSHSGFSRHLFRFVI 499
           +YF+  +AE   C A   W S     S Y+P   SGFSR LF FV+
Sbjct: 150 RYFVFKMAEC--CSADTAWES---GKSNYLPIHVSGFSRCLFEFVL 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,444
Number of Sequences: 59808
Number of extensions: 359500
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)