Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0398
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    31   0.61 
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    28   5.7  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    28   7.5  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    28   7.5  
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    27   9.9  
U50071-1|AAA93442.1|   87|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 129 AVEGVTTAHSCFFFTFVTIVLNLTLVGTY 43
           +VE VT   S FF+TF+ I+ N++L  T+
Sbjct: 626 SVEFVTLCMSSFFYTFINIIFNISLRWTF 654


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 657 QCFFEVLLKYFLSVAEALLCFAK*IWSSRCWSFSPYIP-HSH 535
           QCFF+  L Y+ ++  +  CF+  ++  R +SF P    H+H
Sbjct: 99  QCFFDGNLYYYTNLFSSFCCFS--LFLDRLFSFKPRSSYHNH 138


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 459  RSGFRSSI*VHLNGSFRFIEANRYFGNTRRWRWCWYLIIFPLFWRIANISFFMFFPISVP 280
            R G R++   HL  +F  + AN        W+ C+  ++FPL  ++    F    PI + 
Sbjct: 1580 RRGVRAAALTHLQRAF--LPANMATLGAAEWQSCFGEVLFPLLTKLLE-PFSQMDPIGME 1636

Query: 279  GAR-RTL 262
              R RTL
Sbjct: 1637 DTRVRTL 1643


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 459  RSGFRSSI*VHLNGSFRFIEANRYFGNTRRWRWCWYLIIFPLFWRIANISFFMFFPISVP 280
            R G R++   HL  +F  + AN        W+ C+  ++FPL  ++    F    PI + 
Sbjct: 1580 RRGVRAAALTHLQRAF--LPANMATLGAAEWQSCFGEVLFPLLTKLLE-PFSQMDPIGME 1636

Query: 279  GAR-RTL 262
              R RTL
Sbjct: 1637 DTRVRTL 1643


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 197 ESVRVQDPGHQGNTLQRGITLQRVLRAPGTEIGKNMKKEIFAIRQNNGKMMRYQ 358
           ES +V     QG  L+   T+Q+  + P T  G +   + F I  + GK+ +Y+
Sbjct: 377 ESAKVAASAPQG-ILRTPATIQKFQQCPSTGPGPSPLLQYFGILLDQGKLNKYE 429


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/76 (21%), Positives = 29/76 (38%)
 Frame = +2

Query: 116 TPSTAKGRLDPRVMILGSMRGTGNIEVESVRVQDPGHQGNTLQRGITLQRVLRAPGTEIG 295
           TPS  K + DP      +  G  +   ++ +     H    +Q    +Q       ++ G
Sbjct: 573 TPSKRKDQNDPNAQ--NAQNGKNDPNAQNAQSDPNAHNAQNVQNAPNVQNASNVQNSQNG 630

Query: 296 KNMKKEIFAIRQNNGK 343
           +N K +  A    NG+
Sbjct: 631 QNDKNDPNAQNSQNGQ 646


>U50071-1|AAA93442.1|   87|Caenorhabditis elegans Hypothetical
           protein B0350.3 protein.
          Length = 87

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 103 FLFFLHFCNNSPKFNFSRHIFCT 35
           FLFF  FC   PKF      +C+
Sbjct: 36  FLFFSKFCKKQPKFEILNVSYCS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,126
Number of Sequences: 27780
Number of extensions: 269837
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)