Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0398
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55365.1 68414.m06328 hypothetical protein                          29   4.0  
At4g17670.1 68417.m02640 senescence-associated protein-related s...    27   9.2  

>At1g55365.1 68414.m06328 hypothetical protein
          Length = 126

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 256 SAESSSSAGDRDRKEHEKRNIRNSPEQWEDDE 351
           SA SSS A D DR   +  N+ N  + + DD+
Sbjct: 76  SASSSSEADDDDRLAFDHNNLYNRRDYYSDDD 107


>At4g17670.1 68417.m02640 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana];
          Length = 159

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 523 PASLQVRHHHHQY*TRTPHS 464
           P S    HHHHQY   +P S
Sbjct: 37  PQSYYYNHHHHQYSVSSPRS 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,324
Number of Sequences: 28952
Number of extensions: 253059
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)