Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0396
         (630 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P78023 Cluster: 50S ribosomal protein L20; n=9; Bacteri...    33   5.7  
UniRef50_UPI00006CC0CD Cluster: Response regulator receiver doma...    33   7.5  
UniRef50_Q1PJE3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  

>UniRef50_P78023 Cluster: 50S ribosomal protein L20; n=9;
           Bacteria|Rep: 50S ribosomal protein L20 - Mycoplasma
           pneumoniae
          Length = 127

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 465 KFSFKDKRNKKHDYKXXXXXXLNKSIVSNNYPFAIFTNL 349
           K++++D+RNKK D++      LN ++      +++F NL
Sbjct: 43  KYAYRDRRNKKRDFRSLWILRLNAALREQGMTYSVFINL 81


>UniRef50_UPI00006CC0CD Cluster: Response regulator receiver domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Response regulator receiver domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1331

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = -3

Query: 325 GTNSICFIRNNHI*SQVRNRRITKSNDETHHISRQN 218
           GT  I FIR++H  ++++NR+IT++N+      +QN
Sbjct: 631 GTTVIFFIRSDHPQNKIQNRQITENNNNELQNQKQN 666


>UniRef50_Q1PJE3 Cluster: Putative uncharacterized protein; n=1;
           uncultured Prochlorococcus marinus clone HOT0M-5C8|Rep:
           Putative uncharacterized protein - uncultured
           Prochlorococcus marinus clone HOT0M-5C8
          Length = 70

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 184 DEKFINFNYSTYFVLKCDVFHRLILLFGDSVPEIK 288
           D K INF Y  YF    ++F+ + LL GDS+  +K
Sbjct: 8   DIKIINFLYDKYFFHYSNIFNNVSLLNGDSIYSLK 42


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,761,998
Number of Sequences: 1657284
Number of extensions: 8483870
Number of successful extensions: 18563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18558
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)