Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0396
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   2.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.2  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   6.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.0  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 164 MYLIILLTFYFPFSFQTVRRVPMTETILKLERQFSVALRNSAYI 33
           MYL++L  FY   S Q ++ +P+ E    LE   S   R  AY+
Sbjct: 206 MYLVMLSRFYDTESSQKIQELPLEE---YLEYAMSSLEREDAYV 246


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 387  VSNNYPFAIFTNLATGFAPHLAPTPFASYVTTTFNLRYGI 268
            V+ NY  +IFTNL  G A ++A     +     F++ Y +
Sbjct: 1375 VTQNYANSIFTNLTYGGARYIATGRGLATTRVPFSVLYSL 1414


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 523 HNTKVTFVNKPMKTSYLHHSFSKWSTK 603
           H+ K +F + P KTS  ++  S W  K
Sbjct: 568 HSEKPSFADSPRKTSLRNYLSSSWRLK 594


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 VMCFIV*FCYSAIPYLRLNVVVTYEANGVGA 325
           V+ FI+ F    IPYL+L V    E  GV A
Sbjct: 419 VVTFIILFITDKIPYLQLRVSPDAEEIGVDA 449


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 8   CRNRHEGHVCRHYFVELPRTAFQVSKWFQSSVLAAQFEKKKENKM 142
           C       V  H F+E  +    +S+W Q + + +  E ++E+K+
Sbjct: 438 CLKVQNPFVFHHSFIEEAKKGLNLSQWVQYNSVYSTNEAQEEDKV 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,564
Number of Sequences: 5004
Number of extensions: 39610
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)