Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0396
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical
           protein T05G5.1 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 250 LILLFGDSVPEIKCGCYV*SKWSWCQMRCKSGG 348
           L+L+F  +V  I CG  + S  S C++RC++GG
Sbjct: 8   LLLMFAFNVGLINCGQSLVSPQSNCKIRCENGG 40


>Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical
           protein F55B12.7 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 137 YFPFSFQTVRRVPMTETILKL 75
           YFPF  + V++VPMT  I+ +
Sbjct: 145 YFPFGIKLVKKVPMTNVIITI 165


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 62  RTAFQVSKWFQSSVLAAQFEKKKENKMLIK*LNT 163
           R+  Q S+W Q+SV  AQ++K +E    IK   T
Sbjct: 103 RSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGT 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,384
Number of Sequences: 27780
Number of extensions: 222224
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)