Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0396
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10540.1 68417.m01726 subtilase family protein contains simil...    29   3.4  
At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SD...    28   5.9  
At3g20660.1 68416.m02615 organic cation transporter family prote...    28   5.9  
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein...    27   7.8  

>At4g10540.1 68417.m01726 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 775

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 255 NQTMKHITFQDKISTIIKINKFFITVSFVWN 163
           N T K ++F+ K+ST  KIN  +   S  W+
Sbjct: 721 NSTTKRVSFKVKVSTTHKINTGYFFGSLTWS 751


>At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SDR)
           family protein similar to peroxisomal short-chain
           alcohol dehydrogenase GI:4105190 from [Homo sapiens]
          Length = 254

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 336 APHLAPTPFASYVTTTFNLRYGIAE 262
           AP   PT FAS++T +  +R GI E
Sbjct: 187 APGFVPTHFASFITGSSEVREGIEE 211


>At3g20660.1 68416.m02615 organic cation transporter family protein
           similar to organic cation transporter OCT3 [Rattus
           norvegicus] GI:3273722, organic cation transporter 3
           [Mus musculus] GI:4454795; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 534

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +1

Query: 217 YFVLKC-----DVFHRLILLFGDSVPEIKC 291
           +FVL C     + FH ++++F D  PE +C
Sbjct: 52  HFVLTCIAWALEAFHTMVMIFADQEPEWRC 81


>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 341

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 98  SVLAAQFEKKKENKMLIK*LNTFHTNDTVMK 190
           S+L    EK  EN ML K  +TFH N+ +++
Sbjct: 124 SILRLCGEKVTENDMLEKTFSTFHANNVLLQ 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,508
Number of Sequences: 28952
Number of extensions: 190221
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)