Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0394
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   6.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.0  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   6.0  

>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 172 ISNINFETYHIPHGRVEEKQI-LGIEQNIYILKLRTFKRYFMCNDTIIQKG 23
           +  +    + +P   V  K++   IE  +Y LKL  + R  +C+  + Q+G
Sbjct: 542 VGELEIHVFFLPALPVSLKELPASIESAMYDLKLAEWDRTLLCDGYLCQQG 592


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 672 FSGSQIGAKTLLMIINNLFH*TLTHQCTSHVR*CNSYNVCFSLKIACGIQICFFFP 505
           + G  + A   + +INN F    T  C S +    +     S+ + C I I   FP
Sbjct: 482 YPGMVLEAMVGVSVINNTFGYVFTFACQSWIDSLGTERTYISIGVLCFIFIATSFP 537


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 477 GQKSHLLFWLEKKNKFGYHMLFLVKNKRYRNCINARDSYIDAS 605
           G+K H  FW  + N  G ++  ++ N ++   +N   S+++ S
Sbjct: 337 GRKKHGNFWTIQGNTLGVYLQEMIHNLQFFPEVNVLYSFLEFS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,137
Number of Sequences: 5004
Number of extensions: 53389
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)