Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0394
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 50  HKVSFECS*FKNVNILFNTKNLFFFYSSVRYVISFKINIRY 172
           +  +FE    +N    F  K L F+YS  R    F  N+++
Sbjct: 377 NSANFEPKKLRNCTFFFGRKRLDFYYSKTRKSFEFSENLKF 417


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 50  HKVSFECS*FKNVNILFNTKNLFFFYSSVRYVISFKINIRY 172
           +  +FE    +N    F  K L F+YS  R    F  N+++
Sbjct: 377 NSANFEPKKLRNCTFFFGRKRLDFYYSKTRKSFEFSENLKF 417


>Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical
           protein C08H9.5 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 311 NEFNLYIERKLRSNFESQLPLTYVLRD*KH 222
           NE+ L + RKLRS   +QL L+  L D KH
Sbjct: 470 NEYFLDLTRKLRSETNNQLRLSNWLSDEKH 499


>Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical
           protein ZK938.5 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 311 NEFNLYIERKLRSNFESQLPLTYVLRD*KH 222
           NE+ L + RKLRS   +QL L+  L D KH
Sbjct: 466 NEYFLDLTRKLRSETNNQLRLSNWLSDEKH 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,254
Number of Sequences: 27780
Number of extensions: 283849
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)