Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0394
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.92 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 51  IKYLLNVLNL--RM*IFCSIPRICFSSTLP 134
           + Y+L   N+  R  +F ++ RIC   T+P
Sbjct: 307 VNYMLKAKNMENRFPLFTTVHRICIGETMP 336


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 148 YHIPHGRVEEKQILGIEQNIYILKLRTFKRYFMCNDTIIQ 29
           YHIP   +  +     ++NI++  LRT   Y    D  ++
Sbjct: 121 YHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQTDVWVE 160


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 634  HQ*SFGPNLTTAELHN 681
            H+  FG  L TAE+HN
Sbjct: 1114 HEDIFGITLRTAEVHN 1129


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 146 SHTSRKSRRKTNSWY*TKYLHS 81
           SH++    R  N  Y TKY HS
Sbjct: 38  SHSNVYQYRCANCTYATKYCHS 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,254
Number of Sequences: 438
Number of extensions: 3228
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)