Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0392
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    36   0.026
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    35   0.045
At1g35515.1 68414.m04409 myb family transcription factor (MYB8) ...    30   1.3  
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    29   3.9  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   3.9  
At5g54110.1 68418.m06737 vesicle-associated membrane family prot...    28   5.1  
At5g45270.1 68418.m05556 WRKY family transcription factor contai...    28   5.1  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   6.8  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   6.8  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   6.8  
At5g02290.2 68418.m00153 protein kinase, putative similar to pro...    27   9.0  
At5g02290.1 68418.m00152 protein kinase, putative similar to pro...    27   9.0  
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S...    27   9.0  

>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
 Frame = +1

Query: 454 DVSQYTPEEIVVKTVDNKLLV-----HAKHEEKSDT-KSVYR---EYNREFLLPKGTNPE 606
           D+     EE+ V+  D+ +L      H + EEK DT   V R   +++R+F LP+    +
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 607 AIKSSLSRDGVLTVEAP 657
            +K+S+  +GVLTV  P
Sbjct: 124 QVKASM-ENGVLTVTVP 139


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 439 LKLRFDVSQYTPEEIVVKTVDNKLLV--HAKHEEKSDTKS--VYREYNREFLLPKGTNPE 606
           +K+RFD+   + E++ +   DN L++    K E+  D+ S      Y     LP     +
Sbjct: 138 IKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKD 197

Query: 607 AIKSSLSRDGVLTVEAP 657
            IK+ L ++GVL +  P
Sbjct: 198 KIKAEL-KNGVLFITIP 213


>At1g35515.1 68414.m04409 myb family transcription factor (MYB8)
           similar to DNA-binding protein GB:AAA98761 GI:1020155
           from [Arabidopsis thaliana]
          Length = 212

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +2

Query: 506 NYWSMPNTRRNLIRNLCTENTTGSFCCPREQILRP----LSLRCPGTVCLPWKRHCHNSP 673
           NYW+  + +R L+       T GS   P+     P    L    PG+V L  +  C N  
Sbjct: 106 NYWNT-HIKRKLLNRGIDPKTHGSIIEPKTTSFHPRNEDLKSTFPGSVKLKMETSCENCA 164

Query: 674 SRTGT 688
           S +GT
Sbjct: 165 STSGT 169


>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 190 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 291
           D+ V+ T++ S+R  FD+  R  E   +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 425 VTARLSSFALMSASILPKRSLLR-LSTTNYWSMPNTRRNL 541
           VT+  S+   M  + LPKR L   L  TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354


>At5g54110.1 68418.m06737 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 266

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 455 MSASILPKRSLLRLSTTNYWSMPNTRRNLIRN-LCTENTTGSFCCPREQILRPLS--LRC 625
           ++ S+LP R  LRL  ++Y   P      +R+ +  +NT+ S    + Q   P S  +R 
Sbjct: 66  VARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRP 125

Query: 626 PGTVCLP 646
           PG V  P
Sbjct: 126 PGGVLAP 132


>At5g45270.1 68418.m05556 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 114

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 681 VRDGELWQWRFHGKHTVPGQRRLNGLRICS 592
           + +G+LW WR +G+  + G R   G   C+
Sbjct: 31  IDEGDLWTWRKYGQKDILGSRFPRGYYRCA 60


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 172 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF 279
           IP++  D   +   F S+R   + +++ M++E +KF
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKF 293


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 549
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 549
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649


>At5g02290.2 68418.m00153 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           SWISS-PROT:Q06548
          Length = 389

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 413 FKTRVTARLSSFALMSASILPKRSLLRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPR 592
           F  R+   ++S   +S+  L +      ST ++  MP T   +++N   +N + S     
Sbjct: 5   FSNRIKTDIASSTWLSSKFLSRDGSKGSSTASFSYMPRTEGEILQNANLKNFSLSELKSA 64

Query: 593 EQILRPLSLRCP---GTVCLPWKRHCHNSPSRTGT 688
            +  RP S+      G V   W      +PS+ GT
Sbjct: 65  TRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGT 99


>At5g02290.1 68418.m00152 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           SWISS-PROT:Q06548
          Length = 389

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 413 FKTRVTARLSSFALMSASILPKRSLLRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPR 592
           F  R+   ++S   +S+  L +      ST ++  MP T   +++N   +N + S     
Sbjct: 5   FSNRIKTDIASSTWLSSKFLSRDGSKGSSTASFSYMPRTEGEILQNANLKNFSLSELKSA 64

Query: 593 EQILRPLSLRCP---GTVCLPWKRHCHNSPSRTGT 688
            +  RP S+      G V   W      +PS+ GT
Sbjct: 65  TRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGT 99


>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
           SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
           discoideum}; contains Pfam profile PF01466: Skp1 family,
           dimerisation domain
          Length = 351

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 621 RRLNGLRICSLGQQKLPVVFSVH 553
           RRLN   + S+GQ++ PV FS++
Sbjct: 313 RRLNSSWVLSIGQERQPVNFSIN 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,539
Number of Sequences: 28952
Number of extensions: 286248
Number of successful extensions: 1054
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)