Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0391
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     31   0.21 
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   3.5  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.0  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   6.0  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   8.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.0  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 298 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALML 477
           S   S+ T +  L  L+ S+L   QL  I     L RGK          S    +D L+L
Sbjct: 428 SDFLSVMTIHIHLLYLASSRLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLL 487

Query: 478 LSIYYAIFRF-LQTIYLFHAKLSVS 549
            +I + +  F L TIY+F+A  +++
Sbjct: 488 GTILFTVLIFFLPTIYVFYAAFALT 512


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
 Frame = +3

Query: 84  NGYQDPKHP----EEEVVSNWPYRTT-PLVLPGAKVRREPGPTESYLRHHPNPAMRAPPN 248
           NG++D +        EVV N+      PL    +  ++     E   R  P P ++A  N
Sbjct: 402 NGFEDQQQQLLGNSNEVVENYDVNPPLPLNPLPSNTQQSESTYEYSARQLPKPPVQAWQN 461

Query: 249 HDYRDTLMKQKVL-----HKQFNSPINLYSEQNIANSIRQQTSPLPTNG 380
            +       Q+ +     +   N+P    SEQ+   S+ Q+    P NG
Sbjct: 462 ENLSSNNKPQEYVGVENDYNFSNNPPTAMSEQSFHPSVSQKPMDTPENG 510


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/86 (26%), Positives = 32/86 (37%)
 Frame = -2

Query: 293 LVQHLLFHKGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFF 114
           L+ HL   + +   +  RCP   V V+    L   +    L S      G +   A NF 
Sbjct: 76  LLSHLSLCQNLIEFLTARCPRLVV-VLPWTVL---QELDGLKSESSSTCGYLARQAHNFL 131

Query: 113 FRMFRILVSVREEVGVERHCYTCRYG 36
            + FR  VS      V  HC +   G
Sbjct: 132 LQCFRSNVSSLRGQKVHEHCSSTEKG 157


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +3

Query: 39  IPTSVTMSLNPNFFPN-GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRH 215
           IP SV  S   NF      Q+P      + S  P    P+     +V ++P P    + +
Sbjct: 159 IPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218

Query: 216 HPNPAMRAPP 245
           + NP+  + P
Sbjct: 219 YYNPSATSKP 228


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 153 LVLPGAKVRR-EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQ 329
           L L GA V+R  P P      H  N A R   NH   +++  +     QF +P N  +  
Sbjct: 147 LELLGAHVQRVTPAPIVDP-NHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHF 205

Query: 330 N 332
           N
Sbjct: 206 N 206


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 135 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQ 296
           P    PL  P  ++ R+P P  S     P+    APP H  R+    + + H +
Sbjct: 44  PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQ-REASPVKNIEHSE 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,212
Number of Sequences: 5004
Number of extensions: 57867
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)