Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0391
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 34 0.096
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 31 0.89
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 30 1.6
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 2.7
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 29 3.6
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558... 29 4.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 6.3
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 6.3
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 28 6.3
11_01_0314 + 2339241-2339728,2342720-2343608 28 8.3
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 28 8.3
09_01_0037 - 604001-604957 28 8.3
08_01_0021 + 161613-162236 28 8.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 8.3
04_04_0347 + 24564589-24565296 28 8.3
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 8.3
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 28 8.3
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 60 SLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNP 227
S +P+ FP Q P P+ + NWP P + PGA PGP + P P
Sbjct: 244 SPSPSSFPLKQQQPPPPQ---LFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMP 296
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +3
Query: 87 GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDY 257
GY P+ PY P P ++P + H+ P + PPNHDY
Sbjct: 778 GYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDY 834
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 132 WPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPI 311
WP T+ GA R P P + P P MRAP + + ++ +HK + +
Sbjct: 414 WPLTTSEK--EGAAESRSPPPMKVKRHSMPPPIMRAPGQFEDNEVKSQEPSVHK-LAAQV 470
Query: 312 NLYSEQNI 335
N ++NI
Sbjct: 471 NKLRKENI 478
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 150 PLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 245
P PG R PGP + P+P R+PP
Sbjct: 50 PSQAPGPAARHAPGPARHHGAPAPHPGRRSPP 81
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 186 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHK 293
P P L+ HP P + PN D ++ + K V+ K
Sbjct: 265 PPPPPPILQEHPQPVVAVVPNVDEQEVVAKPAVIAK 300
>08_01_1000 +
10154024-10154147,10155500-10155761,10155839-10155885,
10155967-10155998,10156079-10156146,10156214-10156605,
10156811-10157009,10157494-10157636,10157722-10158366,
10158493-10158551,10158725-10158823
Length = 689
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 1/121 (0%)
Frame = +3
Query: 36 SIPTSVTMSLNPNFFPNGYQDPKHP-EEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLR 212
SI + L+P N P+H ++ N + P + P + V E P
Sbjct: 459 SIQDTHDHQLSPKSPGNTDAQPEHQFNQQAPRNSDGQPEPELNPKSPVNAEAQPESQINP 518
Query: 213 HHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGR 392
P A P + + H I +S QNI + IR SP T G G
Sbjct: 519 QSPRNADGQPEPELNPKSPGEAGTSHFDDMPEIPRFSPQNIPSPIRDDNSPFKTPGAGGT 578
Query: 393 P 395
P
Sbjct: 579 P 579
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 144 TTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 245
T PL +P P T + L +PNP+ PP
Sbjct: 25 TPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPP 58
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 183 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 284
E G E +R H PA RAP D YR ++ +KV
Sbjct: 190 EMGIEEDIIRKHTTPAYRAPEMWDLYRREVISEKV 224
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -2
Query: 425 LVKDLPLDNVRPSVMAVSWQRRSLLPD-RVCNVLFRV*IDWRVELLVQHLLFH--KGITV 255
LV LP+ P + S +R S P + N F + D EL + L FH KG+T
Sbjct: 381 LVVSLPIPP-SPLMSYSSIKRLSAFPTMEINNRKFTIESDELSELDGRILSFHNLKGVTS 439
Query: 254 VVVRRCPH 231
+ +RRCP+
Sbjct: 440 IYLRRCPN 447
>11_01_0314 + 2339241-2339728,2342720-2343608
Length = 458
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 502 RFLQTIYLFHAKLSVSFYEHEHVVDLLAEDLEP 600
RF ++ F+A V+ E+ H+VD++ DL+P
Sbjct: 156 RFSESAVRFYAAEVVAALEYVHMVDIVYRDLKP 188
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 183 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 284
E G E +R H PA RAP D YR ++ +KV
Sbjct: 192 EMGIEEDNIRKHTTPAYRAPEMWDLYRREVISEKV 226
>09_01_0037 - 604001-604957
Length = 318
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 45 TSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAK-VRREPGPTESYLRHHP 221
TS+++SL+ + + DP P E V P + + P VR+EP L+ P
Sbjct: 202 TSLSLSLSLPGLDHPHPDPSTPSEPAVQLQPPPPSQMPPPTPSCVRQEPPQMPFQLQPPP 261
Query: 222 NPAMRAP 242
P AP
Sbjct: 262 PPRPSAP 268
>08_01_0021 + 161613-162236
Length = 207
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 213 HHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPT 374
HHP + PP + L +Q +Q +SP + EQ A S PLP+
Sbjct: 87 HHPTLLAQMPPQPSFPFHLQQQDAWPQQQHSPAAI--EQAAARSSGADLPPLPS 138
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 236 PHCWVGVMTQVTLCGARLPSDLS 168
P+C GV T VT+ GA+ PS+ S
Sbjct: 198 PYCRNGVRTSVTVSGAQYPSNSS 220
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3
Query: 108 PEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHD 254
P V+ P P + V+ P PT RH P +PP+ D
Sbjct: 141 PAPAVIHGTNSHLAPAPAPSSHVQYSPAPTPGDGRHQSPPPPPSPPSAD 189
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 275 FH--KGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERS 147
FH KGIT V +RRCP+ +T++++ G P +S H+ S
Sbjct: 1090 FHNLKGITWVNLRRCPN-----LTRISIDGFSQPHVMSKPVHDNS 1129
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 237 APPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVV 404
AP + +Q V +S LY+ Q+ NS QT+P + +GR H+V
Sbjct: 308 APTEKPVNSAVNRQSVAPPMAHSA-QLYASQSNINSSVSQTAPTRESVQHGRVHMV 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,389,326
Number of Sequences: 37544
Number of extensions: 399308
Number of successful extensions: 1140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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