Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0391
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_58030| Best HMM Match : cIII (HMM E-Value=7.7) 29 4.9
SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16) 28 8.5
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.5
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 28 8.5
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 42 PTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHH 218
P T P+ P + P HP S+ PY T L G + REP P S+ H
Sbjct: 474 PHHATSYNAPSGMPTHREPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQ 531
Query: 219 P 221
P
Sbjct: 532 P 532
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 93 QDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 221
+ P HP S+ PY T L G + REP P S+ H P
Sbjct: 520 EPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 274 NKRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 435
N ++ ST +S T RT+ + S ++ R+C++ T GR+ RGK +N+T
Sbjct: 147 NTSSSSNVSTTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201
>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 532 AKLSVSFYEHEHVVDLLAEDLEPAPQTR*NNECAADRCLFHKKIN 666
AKL+++ +E V L ++LE +T NN D C F KK+N
Sbjct: 403 AKLNLTTTNYEEKVTTLEKELEELKRTGINNRNITDNC-FWKKVN 446
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 186 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQ--KVLHKQFNSPINLYSEQNIANSIRQQT 359
PGP+ S P P+ R P +Y + +Q +VL ++ +L S + T
Sbjct: 1319 PGPSTS-TNVTPLPSPRLPQRPNYEGDMREQLEQVLTRESRERSSLRSSR--------PT 1369
Query: 360 SPLPTNGHYGRPH 398
+PLPT GH PH
Sbjct: 1370 APLPTPGHRPEPH 1382
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = +3
Query: 213 HHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGR 392
H P P M PP + D K H N P++ + ++ + +R + + YG
Sbjct: 549 HRPLPCMEGPPVEIHVDPTSKPTACHTPANIPLH-WQKRVYEDLLRDEALGVVERVPYGE 607
Query: 393 PHVVKRQVFY*KRHNA----TVDAHP 458
P ++ ++H+ TVD P
Sbjct: 608 PVTWCHRMVVTRKHDGSPRRTVDLSP 633
>SB_58030| Best HMM Match : cIII (HMM E-Value=7.7)
Length = 167
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -2
Query: 248 VRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFFFRMFRILVSVREEVG 69
V + P G+ + C A +P +++ H R +P+ F+ +I ++V
Sbjct: 63 VAKLPVRMFGIRYEEATCAAHVPCTINNSPHSRLNK-QPIPSRFYPVFDKIGLTVAGYQP 121
Query: 68 VERHCYTCR 42
R CY C+
Sbjct: 122 GTRWCYRCK 130
>SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)
Length = 488
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 152 RSGAVRPVADNFFFRMFRILVSVREEVGVERHCYTCRYG 36
++ A PVADNF R +I V + + V + CR G
Sbjct: 53 KNEATLPVADNFKDRFQQIQVEIEHMIAVLQQMELCRSG 91
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 526 FHAKLSVSFYEHEHVVDLLAEDLEPAPQTR 615
+HAKLS+ EHVV + A DL+ A R
Sbjct: 690 YHAKLSLDAPVLEHVVQVTATDLDTANNGR 719
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = +3
Query: 99 PKHPEEEVVSNWPYRTTPLV----LPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDT 266
P+ P N P R P V P +RRE G T+S+ P P R P D +
Sbjct: 697 PQIPTRTGSVNKPSRAPPPVPNHPSPAVPLRRE-GDTKSFAPQRPPPPTRTPSGKDRPHS 755
Query: 267 LMKQKVLH 290
LH
Sbjct: 756 TTATPTLH 763
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,483,863
Number of Sequences: 59808
Number of extensions: 458192
Number of successful extensions: 1295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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