Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0391
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 31 0.56
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 0.98
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 29 2.3
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 29 2.3
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 4.0
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 29 4.0
At3g44200.1 68416.m04739 protein kinase family protein contains ... 28 6.9
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 28 6.9
At1g79250.1 68414.m09239 protein kinase, putative similar to vir... 27 9.2
At1g12970.1 68414.m01506 leucine-rich repeat family protein 27 9.2
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 213 HHPNPAMRAPPNHD--YRDTLMKQKVLHKQFNSPINLYSEQ 329
H+P P M+ PP HD Y M+Q + KQ + I+ Y +
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGRE 440
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 403 SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFRFLQTIYLFHAK 537
S+ ++ ++A+M++ ++ D L LLSIYY++ R Q + L K
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCRPRQEVVLSELK 2374
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 29.5 bits (63), Expect = 2.3
Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 8/131 (6%)
Frame = +3
Query: 18 ARGSXTSIPTSVTMSLNPNFFPNGYQD------PKHPEEEVVSNWP--YRTTPLVLPGAK 173
+ S +S P S + PN +P+ YQ+ P H V NW Y +P
Sbjct: 140 SESSPSSSPRSERSNFMPNLYPSAYQNSTYSATPSHASS--VWNWENFYPPSPPDSEFFN 197
Query: 174 VRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQ 353
+ + S R + +D+ DT KQK KQF S N E+
Sbjct: 198 RKAQEKKHNSDNRFNDEDTETVRSEYDFFDT-RKQK--QKQFESMRNQVEEETETEREEV 254
Query: 354 QTSPLPTNGHY 386
Q S + HY
Sbjct: 255 QCSEWEDHDHY 265
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 131 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 250
+A P +S P P A PH++ P S PQP+N + P
Sbjct: 1 MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 81 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 245
P+ P+ P+E N PY +P+ K RR P P + P+P PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Frame = +3
Query: 81 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR--APPNHD 254
P Y P P++ V P P P P + Y+ P P ++ +PP
Sbjct: 303 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 362
Query: 255 YRDTLMKQKVLHKQFNSPINLYSEQNIANS-------IRQQTSPLPTNGHYGRPH 398
+ K+ ++K P+ YS + +S ++ P P HY PH
Sbjct: 363 HSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKEKYVYKSPPPPPVHHYSPPH 417
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 285 LHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 440
LH + + +N +S+ S+ Q S L N + PH V V + RH++
Sbjct: 706 LHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 111 EEEVVSNWPYRTTPLVLPGAKVRREPGPTE-SYLRHHPNPAMRAPPNHDYRDTLMKQKVL 287
+ E + P TTP LP KVR+E + + L+ +P + ++ + K L
Sbjct: 260 DNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
Query: 288 HKQFNSPINLYSEQNIANSIRQQTS 362
H Q Y +Q +N +QQ S
Sbjct: 320 HDQVTVLSTPYMKQGASNQQQQQIS 344
>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
symptom modulation protein/dual-specificity protein
kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
Length = 555
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +3
Query: 183 EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTS 362
+P P H PNP+ + P + T + + K N+ N S + ++ + TS
Sbjct: 55 KPEPAGFTNHHRPNPSPKIPSSPGSNMTESQSNLNTKPNNNNSNNNSNMSSRSNSIESTS 114
Query: 363 PLPTNGHYG 389
P+ H G
Sbjct: 115 SNPSKPHTG 123
>At1g12970.1 68414.m01506 leucine-rich repeat family protein
Length = 464
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 192 PTESYLRHHPNPAMRAPPN 248
P SY+ HH +PA APP+
Sbjct: 9 PLLSYVLHHSDPASHAPPS 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,003
Number of Sequences: 28952
Number of extensions: 310459
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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